NC_006050.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_006050.1 Nymphaea alba chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159930
Tables: 1
This is table 1 of 1 ( 34 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2076--2100 12 2.1 12 100 0 50 24 16 16 44 1.86
7752--7779 13 2.2 13 100 0 56 10 21 0 67 1.20
10117--10149 16 2.1 16 100 0 66 48 30 0 21 1.50
29154--29193 20 2.0 20 85 0 53 37 35 5 22 1.76
34264--34307 22 2.0 22 100 0 88 27 18 13 40 1.88
34361--34389 14 2.1 14 100 0 58 44 13 0 41 1.44
34643--34676 15 2.3 15 100 0 68 47 8 11 32 1.71
35644--35680 19 1.9 19 88 0 56 40 13 18 27 1.88
35704--35731 11 2.5 11 100 0 56 85 7 7 0 0.73
40136--40166 14 2.2 14 100 0 62 58 6 6 29 1.48
47266--47308 12 3.5 12 75 6 50 53 4 18 23 1.63
47275--47316 13 3.3 13 73 6 50 47 9 21 21 1.79
47268--47317 25 2.0 25 100 0 100 48 8 20 24 1.76
47419--47447 14 2.1 14 100 0 58 48 20 6 24 1.74
51136--51176 14 3.0 14 79 13 50 56 0 0 43 0.99
54704--54745 21 2.0 21 100 0 84 23 14 14 47 1.80
56709--56737 14 2.1 14 100 0 58 20 6 31 41 1.79
57248--57281 17 2.0 17 100 0 68 29 17 29 23 1.97
72402--72429 14 2.0 14 100 0 56 21 7 28 42 1.79
72464--72491 14 2.0 14 100 0 56 14 21 7 57 1.61
73779--73821 21 2.0 21 86 0 59 30 25 13 30 1.94
75614--75680 32 2.1 32 100 0 134 31 5 19 43 1.75
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
83577--83604 14 2.0 14 100 0 56 21 0 21 57 1.41
94759--94827 21 3.1 21 85 10 86 15 21 8 53 1.69
96292--96340 21 2.3 20 80 13 53 30 14 26 28 1.95
97094--97144 24 2.1 24 100 0 102 29 11 25 33 1.91
117913--117937 13 1.9 13 100 0 50 44 0 40 16 1.47
130622--130663 21 2.0 21 100 0 84 14 33 19 33 1.91
132727--132936 21 9.7 21 80 5 197 30 6 17 45 1.74
132727--132936 42 4.9 42 84 8 251 30 6 17 45 1.74
133162--133187 12 2.2 12 100 0 52 23 19 7 50 1.73
152801--152851 24 2.1 24 100 0 102 33 25 11 29 1.91
153605--153653 21 2.3 20 80 13 53 28 26 14 30 1.95
155118--155186 21 3.1 21 85 10 86 53 8 21 15 1.69
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Tables: 1
The End!