NC_007957.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_007957.1 Vitis vinifera chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160928
Tables: 1
This is table 1 of 1 ( 36 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
287--325 20 2.0 19 95 5 69 61 10 7 20 1.52
1923--1952 15 2.0 15 100 0 60 33 20 13 33 1.91
6637--6673 11 3.4 11 92 0 65 43 8 0 48 1.32
6637--6683 22 2.1 22 84 0 58 46 6 2 44 1.40
6704--6790 27 3.1 27 73 6 66 49 2 2 45 1.27
6820--6852 17 1.9 17 93 0 57 57 3 0 39 1.14
7554--7583 14 2.1 14 100 0 60 50 6 6 36 1.55
7710--7734 12 2.1 12 100 0 50 24 16 8 52 1.70
14644--14672 14 2.1 14 100 0 58 58 6 13 20 1.58
14950--14983 17 2.0 17 100 0 68 23 41 0 35 1.55
15760--15795 16 2.3 16 95 4 65 36 16 8 38 1.79
28956--28995 20 2.0 20 100 0 80 25 15 15 45 1.84
30749--30774 12 2.2 12 100 0 52 73 0 0 26 0.84
31756--31780 11 2.3 11 100 0 50 44 12 8 36 1.71
34697--34732 16 2.2 16 100 0 72 50 11 5 33 1.61
39643--39764 16 7.5 16 69 17 56 50 0 2 46 1.20
39699--39752 28 1.9 30 85 14 80 53 1 3 40 1.29
39756--39805 19 2.8 19 82 14 54 32 0 4 64 1.12
39890--39927 11 3.3 12 85 10 53 55 0 0 44 0.99
39888--39939 21 2.5 19 77 17 50 53 0 0 46 1.00
54858--54901 14 3.0 14 86 6 61 52 0 0 47 1.00
55316--55347 16 2.0 16 93 0 55 28 6 12 53 1.62
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
61891--61938 24 2.0 24 100 0 96 37 8 12 41 1.73
63507--63537 14 2.2 14 100 0 62 74 0 12 12 1.08
72750--72776 13 2.1 13 100 0 54 62 0 7 29 1.22
72905--72945 21 2.0 21 95 0 73 29 26 9 34 1.88
79917--79962 23 2.0 23 95 0 83 41 13 19 26 1.88
93963--94051 21 4.1 21 81 5 90 12 23 10 53 1.68
96413--96500 18 5.1 17 94 4 99 29 9 26 35 1.87
96423--96500 18 4.3 18 98 0 147 29 10 26 33 1.89
96423--96499 9 8.6 9 69 0 55 29 10 27 32 1.90
129760--129796 17 2.2 17 90 0 56 51 0 0 48 1.00
153560--153637 18 4.3 18 98 0 147 33 26 10 29 1.89
153573--153636 9 7.1 9 70 0 56 34 28 7 29 1.85
153560--153647 18 5.1 17 94 4 99 35 26 9 29 1.87
156009--156097 21 4.1 21 81 5 90 53 10 23 12 1.68
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Tables: 1
The End!