NC_008115.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_008115.1 Eucalyptus globulus subsp. globulus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160286
Tables: 1
This is table 1 of 1 ( 38 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
323--382 29 2.1 29 96 0 111 48 5 21 25 1.70
9095--9126 15 2.1 15 94 0 55 40 12 0 46 1.42
9288--9341 27 2.0 27 92 0 90 42 3 12 37 1.61
11158--11197 19 2.0 20 85 4 55 50 5 5 40 1.46
13918--13942 13 1.9 13 100 0 50 32 12 0 56 1.36
14292--14337 21 2.1 22 84 4 58 30 6 2 60 1.34
34389--34434 23 2.0 22 87 4 65 47 4 6 41 1.49
34645--34692 17 2.9 17 87 6 64 33 10 12 43 1.77
34738--34787 25 2.0 25 100 0 100 56 8 4 32 1.47
35704--35730 13 2.1 13 100 0 54 33 7 14 44 1.73
39676--39709 16 2.1 16 88 0 50 32 2 11 52 1.53
45736--45820 12 7.2 12 77 17 90 36 2 0 61 1.09
45747--45785 19 2.1 19 100 0 78 35 0 0 64 0.94
45738--45824 19 4.6 19 77 20 76 35 2 0 62 1.08
46946--46971 13 2.0 13 100 0 52 23 7 7 61 1.49
46945--46974 13 2.4 12 89 10 51 20 6 6 66 1.38
48244--48276 16 2.0 17 94 5 59 72 12 0 15 1.12
52724--52767 21 2.1 21 100 0 88 22 13 0 63 1.29
63856--63893 14 2.7 14 100 0 76 36 23 5 34 1.78
65269--65297 14 2.1 14 100 0 58 20 20 6 51 1.70
69415--69453 18 2.2 18 100 0 78 46 5 10 38 1.60
79817--79860 21 2.0 21 82 4 52 22 18 4 54 1.61
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
93793--93858 21 3.2 21 82 2 80 12 22 7 57 1.60
96221--96265 18 2.5 18 96 0 81 35 6 28 28 1.83
103943--103975 17 1.9 17 93 0 57 6 9 3 81 0.95
113868--113899 16 2.0 16 93 0 55 37 15 9 37 1.80
114908--114943 18 2.0 18 100 0 72 38 16 16 27 1.90
115397--115456 28 2.3 26 85 8 77 68 0 8 23 1.16
115458--115516 26 2.2 27 87 6 84 55 5 3 35 1.38
115506--115542 18 2.1 18 94 0 65 54 8 10 27 1.63
115581--115628 19 2.7 18 77 6 53 70 2 4 22 1.15
123101--123129 14 2.0 15 93 6 51 55 0 0 44 0.99
134356--134391 18 2.0 18 100 0 72 27 16 16 38 1.90
134360--134400 18 2.3 18 87 8 57 31 12 14 41 1.83
135400--135431 16 2.0 16 93 0 55 37 9 15 37 1.80
145324--145356 17 1.9 17 93 0 57 81 3 9 6 0.95
153034--153078 18 2.5 18 96 0 81 28 28 6 35 1.83
155440--155529 21 4.1 21 81 4 81 55 10 22 12 1.66
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Tables: 1
The End!