NC_008325.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_008325.1 Daucus carota chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155911
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
15250--15292 20 2.2 20 82 0 50 44 11 20 23 1.84
20449--20545 49 2.0 49 87 0 140 30 16 20 31 1.95
28277--28304 14 2.0 14 100 0 56 57 7 0 35 1.26
28290--28322 12 2.8 12 90 4 50 54 9 6 30 1.56
29783--29819 18 2.1 18 100 0 74 35 21 10 32 1.88
31163--31206 22 2.0 22 100 0 88 36 4 0 59 1.18
48883--48909 13 2.1 13 100 0 54 0 44 22 33 1.53
51228--51279 24 2.2 24 100 0 104 13 15 5 65 1.44
59708--59732 12 2.1 12 100 0 50 36 0 16 48 1.46
62134--62160 14 1.9 14 100 0 54 40 14 7 37 1.74
68102--68142 21 2.0 21 95 0 73 29 26 9 34 1.88
70324--70361 20 1.9 19 89 5 58 71 0 15 13 1.16
71427--71458 16 2.0 16 93 0 55 71 0 12 15 1.14
88428--88516 21 4.2 21 84 5 117 12 22 7 57 1.61
89624--89667 15 2.9 15 93 0 70 27 34 13 25 1.93
90884--90967 18 4.7 18 98 0 159 28 5 32 33 1.81
93183--93208 13 2.0 13 100 0 52 38 7 23 30 1.83
109452--109487 18 2.0 18 100 0 72 22 22 5 50 1.70
113974--114032 3 19.7 3 80 13 59 57 0 0 42 0.98
113973--114038 24 2.8 24 97 0 123 56 0 0 43 0.99
127090--127128 18 2.2 18 85 0 51 12 5 7 74 1.20
130667--130702 18 2.0 18 100 0 72 50 5 22 22 1.70
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
146946--146971 13 2.0 13 100 0 52 30 23 7 38 1.83
149187--149270 18 4.7 18 98 0 159 33 32 5 28 1.81
150487--150530 15 2.9 15 93 0 70 25 13 34 27 1.93
151656--151726 21 3.4 21 92 3 90 57 9 21 11 1.62
151638--151726 42 2.1 42 85 4 117 57 7 22 12 1.61
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Tables: 1
The End!