NC_008334.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_008334.1 Citrus sinensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160129
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8915--8939 12 2.1 12 100 0 50 16 24 0 60 1.36
8968--8998 16 1.9 16 93 0 53 48 9 12 29 1.73
13436--13467 15 2.1 15 100 0 64 31 6 0 62 1.20
31895--31931 17 2.2 17 100 0 74 32 10 0 56 1.34
34188--34224 18 2.1 18 100 0 74 24 10 32 32 1.90
34678--34723 22 2.1 22 100 0 92 45 0 17 36 1.49
34741--34768 14 2.0 14 100 0 56 50 7 21 21 1.72
39530--39560 10 3.1 10 95 0 53 48 0 3 48 1.17
39773--39822 24 2.1 24 100 0 100 38 12 16 34 1.85
45770--45803 16 2.1 16 94 0 59 64 5 2 26 1.30
51918--51948 15 2.1 15 93 0 53 9 3 0 87 0.66
58267--58309 21 2.0 22 95 4 79 23 18 11 46 1.82
61278--61319 18 2.3 18 100 0 84 45 11 23 19 1.83
62743--62791 25 2.0 24 92 4 80 44 8 4 42 1.53
72158--72196 21 1.9 21 89 5 62 33 25 10 30 1.89
81291--81321 16 1.9 16 100 0 62 12 9 0 77 0.99
88943--88988 23 2.0 23 100 0 92 47 17 8 26 1.76
93121--93195 21 3.2 24 70 16 68 10 24 8 57 1.59
95575--95610 18 2.0 18 100 0 72 27 11 27 33 1.91
103367--103405 12 3.2 12 85 10 53 7 5 0 87 0.68
103371--103409 10 4.1 9 83 9 51 10 2 0 87 0.65
103905--103942 18 2.1 18 95 0 67 23 7 5 63 1.42
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
112042--112103 32 1.9 32 96 0 115 38 24 9 27 1.86
117441--117484 20 2.2 20 95 0 79 56 4 4 34 1.40
118129--118171 19 2.5 16 80 20 59 48 9 13 27 1.73
118135--118172 19 2.0 19 100 0 76 42 10 15 31 1.81
123021--123060 19 2.1 19 100 0 80 50 10 15 25 1.74
135771--135832 32 1.9 32 96 0 115 27 9 24 38 1.86
143932--143969 18 2.1 18 95 0 67 63 5 7 23 1.42
144465--144503 10 4.1 9 83 9 51 87 0 2 10 0.65
152264--152299 18 2.0 18 100 0 72 33 27 11 27 1.91
158886--158931 23 2.0 23 100 0 92 26 8 17 47 1.76
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Tables: 1
The End!