NC_009599.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_009599.1 Buxus microphylla chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159010
Tables: 1
This is table 1 of 1 ( 26 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
10673--10704 16 2.0 16 100 0 64 31 0 18 50 1.48
30484--30521 19 2.0 19 100 0 76 42 21 15 21 1.89
31227--31276 25 2.0 25 100 0 100 44 12 20 24 1.85
45552--45603 26 2.0 26 100 0 104 38 19 15 26 1.91
49159--49186 14 2.0 14 100 0 56 57 0 7 35 1.26
49608--49641 17 2.0 17 100 0 68 52 5 5 35 1.50
62635--62669 15 2.2 16 90 5 54 45 8 5 40 1.58
64018--64051 16 2.1 17 88 5 52 47 17 14 20 1.83
71898--71938 21 2.0 21 95 0 73 29 26 9 34 1.88
79350--79393 19 2.4 18 80 3 52 79 4 2 13 0.98
83288--83333 24 1.9 24 90 0 74 23 34 15 26 1.94
86385--86426 21 2.0 20 90 4 66 26 0 9 64 1.24
86393--86417 12 2.1 12 100 0 50 24 0 8 68 1.16
90294--90345 23 2.3 22 83 6 77 44 9 19 26 1.81
92919--93007 21 4.1 21 88 5 117 12 24 11 51 1.72
95355--95432 18 4.5 18 92 4 126 33 5 24 37 1.78
95367--95425 9 6.6 9 74 0 55 33 6 25 33 1.82
111845--111910 32 2.1 32 97 0 123 40 24 9 25 1.84
116312--116353 21 2.0 20 82 13 50 52 21 2 23 1.59
117416--117450 17 2.1 17 94 0 61 54 0 8 37 1.31
124152--124182 15 2.1 15 100 0 62 32 6 0 61 1.21
131319--131381 24 2.6 25 76 19 69 3 25 1 69 1.12
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
135245--135310 32 2.1 32 97 0 123 25 9 24 40 1.84
151726--151788 9 7.0 9 74 0 63 34 25 6 33 1.81
151723--151800 18 4.5 18 92 4 126 37 24 5 33 1.78
154148--154236 21 4.1 21 88 5 117 51 11 24 12 1.72
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Tables: 1
The End!