NC_013273.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_013273.1 Coix lacryma-jobi chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 140745
Tables: 1
This is table 1 of 1 ( 38 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6241--6275 17 2.1 17 100 0 70 54 11 5 28 1.59
6323--6356 17 2.0 17 100 0 68 47 11 5 35 1.65
6850--6876 13 2.1 13 100 0 54 51 22 0 25 1.48
9002--9037 18 2.0 18 100 0 72 27 27 5 38 1.79
13083--13122 17 2.3 18 95 4 73 40 0 5 55 1.22
14166--14190 12 2.1 12 100 0 50 36 16 16 32 1.90
16363--16493 67 2.0 67 89 0 199 31 16 23 28 1.96
19093--19121 14 2.0 15 93 6 51 75 0 17 6 1.01
20931--20967 9 4.2 9 86 6 58 54 0 0 45 1.00
20923--20972 17 3.2 14 79 20 55 52 2 0 46 1.12
20930--20965 17 2.1 17 94 0 63 55 0 0 44 0.99
27282--27322 21 2.0 21 100 0 82 26 29 14 29 1.95
28175--28203 15 1.9 15 100 0 58 27 34 17 20 1.95
29248--29310 21 3.0 21 88 0 90 39 14 33 12 1.84
29368--29458 21 4.3 21 76 5 94 41 14 24 19 1.88
29381--29470 21 4.3 21 75 10 94 40 14 26 18 1.89
29362--29458 42 2.3 42 89 3 142 41 13 26 18 1.88
29552--29629 33 2.4 32 80 8 95 39 11 32 16 1.85
35234--35261 14 2.0 14 100 0 56 57 7 7 28 1.52
48154--48188 17 2.1 17 100 0 70 60 11 17 11 1.59
50252--50298 21 2.2 21 96 0 85 40 8 21 29 1.83
53010--53038 15 1.9 15 100 0 58 41 0 6 51 1.28
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
54147--54174 14 2.0 14 100 0 56 64 14 0 21 1.29
56926--56956 15 2.1 15 100 0 62 19 32 6 41 1.77
59304--59329 13 2.0 13 100 0 52 7 30 7 53 1.57
67744--67795 14 3.1 19 70 30 55 26 0 7 65 1.20
67917--68041 21 6.0 21 83 3 171 37 25 5 31 1.79
67917--68038 63 1.9 63 90 3 192 37 26 4 31 1.77
68329--68387 21 2.8 21 75 10 66 49 22 10 18 1.77
70701--70751 17 3.0 17 100 0 102 52 5 11 29 1.61
70684--70751 34 2.0 35 88 2 102 50 7 10 32 1.64
72886--72930 22 2.0 23 91 4 74 53 2 17 26 1.56
78759--78798 18 2.2 18 86 0 53 2 20 7 70 1.24
78771--78811 18 2.3 18 86 0 55 9 14 2 73 1.19
94344--94376 14 2.4 14 94 0 57 27 15 3 54 1.55
108416--108453 10 3.7 10 86 6 58 26 15 10 47 1.78
108411--108452 21 2.0 21 100 0 84 28 14 9 47 1.75
129162--129194 14 2.4 14 94 0 57 54 3 15 27 1.55
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Tables: 1
The End!