NC_013707.2.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_013707.2 Olea europaea cultivar Bianchera chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155888
Tables: 1
This is table 1 of 1 ( 26 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
16550--16589 19 2.1 19 90 0 62 45 12 7 35 1.70
56632--56657 13 2.0 13 100 0 52 53 7 15 23 1.67
58899--58940 18 2.2 19 83 8 50 54 19 7 19 1.66
62034--62078 21 2.1 21 100 0 90 31 22 15 31 1.95
64298--64333 17 2.1 17 100 0 72 41 16 0 41 1.48
65742--65771 14 2.1 14 100 0 60 30 20 13 36 1.90
70597--70637 21 2.0 21 95 0 73 29 26 9 34 1.88
83167--83204 12 3.2 12 96 0 67 23 15 5 55 1.61
91342--91396 24 2.5 22 85 8 67 14 23 12 49 1.78
91364--91431 21 3.2 21 77 8 75 11 22 8 57 1.61
93754--93835 18 4.8 17 89 4 87 32 7 23 36 1.82
93768--93843 18 4.2 18 94 0 125 32 7 25 34 1.85
93768--93830 9 7.0 9 70 0 54 33 6 25 34 1.81
93754--93843 36 2.6 36 89 5 132 33 7 23 35 1.84
109599--109659 31 2.0 31 93 0 104 40 21 9 27 1.85
113933--113971 20 2.0 20 85 10 53 56 23 0 20 1.42
126518--126568 24 2.1 24 85 0 66 17 11 5 64 1.45
128789--128844 27 2.0 28 86 10 80 0 23 5 71 1.06
128789--128842 14 3.9 14 79 11 58 0 24 3 72 1.01
128786--128847 32 1.9 33 83 9 83 0 22 6 70 1.09
132797--132857 31 2.0 31 93 0 104 27 9 21 40 1.85
140781--140826 23 2.0 23 86 0 65 60 6 6 26 1.46
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
148613--148688 18 4.2 18 94 0 125 34 25 7 32 1.85
148614--148680 9 7.4 9 68 0 53 31 26 8 32 1.87
148639--148702 18 3.8 16 80 13 67 37 21 6 34 1.79
151025--151114 21 4.1 22 75 8 76 54 10 23 12 1.67
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Tables: 1
The End!