NC_014575.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_014575.1 Cedrus deodara chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  119299

    Tables:   1   

    This is table  1  of  1  ( 20 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  19973--20000                       14       2.0      14          100       0         56      35   14   0    50   1.43

  42181--42213                       16       2.1      16          100       0         66      36   24   0    39   1.56

  45674--45744                       21       3.1      21          69        21        61      22   16   30   29   1.96

  45683--45735                       27       2.0      27          88        0         79      18   16   33   30   1.94

  47869--47899                       15       2.1      15          100       0         62      48   12   6    32   1.67

  47884--47941                       30       1.9      30          96        0         107     50   8    15   25   1.73

  49596--49708                       24       4.7      24          96        0         199     44   12   26   16   1.83

  51135--51214                       39       2.1      39          92        0         133     36   15   26   22   1.93

  69267--69313                       22       2.1      22          100       0         94      38   8    17   36   1.80

  73689--73732                       21       2.1      21          91        0         70      43   15   11   29   1.82

  85871--85908                       13       2.9      13          100       0         76      31   21   7    39   1.82

  89482--89511                       15       2.0      15          93        0         51      50   10   20   20   1.76

  91172--91213                       21       2.0      21          95        0         75      40   9    40   9    1.70

  102107--102131                     13       1.9      13          100       0         50      40   24   8    28   1.83

  106534--106570                     14       2.6      14          100       0         74      43   13   0    43   1.44

  106567--106602                     12       2.8      13          91        8         56      41   0    13   44   1.44

  106567--106596                     14       2.1      14          100       0         60      43   0    13   43   1.43

  106709--106753                     21       2.1      21          95        0         81      20   11   42   26   1.85

  112647--112681                     17       2.1      17          100       0         70      42   0    5    51   1.25

  116814--116857                     21       2.1      21          95        0         79      29   22   13   34   1.93
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!