NC_016430.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_016430.1 Eleutherococcus senticosus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156768
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5074--5114 20 2.0 20 100 0 82 53 4 21 19 1.63
7022--7054 16 2.1 16 100 0 66 24 6 18 51 1.68
7113--7137 13 1.9 13 100 0 50 24 20 24 32 1.98
9637--9666 14 2.1 14 100 0 60 80 0 13 6 0.91
29875--29926 2 26.0 2 79 14 54 44 1 3 50 1.31
29875--29926 9 6.5 8 77 14 54 44 1 3 50 1.31
29875--29912 11 3.5 11 82 13 51 47 0 2 50 1.15
29872--29926 20 2.7 20 78 16 67 41 3 3 50 1.37
44772--44809 11 3.2 12 86 13 53 60 10 0 28 1.30
44771--44817 16 3.0 16 93 3 78 59 10 0 29 1.31
49242--49288 20 2.3 20 96 0 85 48 12 0 38 1.41
49242--49294 20 2.7 20 90 0 70 50 11 1 35 1.49
49288--49347 19 3.2 19 97 0 111 43 5 16 35 1.70
59689--59738 25 2.0 25 88 7 75 30 4 14 52 1.59
64345--64372 14 2.0 14 100 0 56 42 14 7 35 1.73
70510--70550 21 2.0 21 95 0 73 29 26 9 34 1.88
70739--70781 21 2.0 21 100 0 86 58 4 9 27 1.49
72432--72474 12 3.6 12 81 12 61 32 11 0 55 1.36
72430--72477 24 2.0 24 100 0 96 37 12 0 50 1.41
86837--86871 17 2.1 17 100 0 70 11 28 0 60 1.32
92267--92311 15 3.0 15 100 0 90 53 6 26 13 1.64
93449--93541 18 5.2 18 98 0 168 30 8 26 34 1.86
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
93449--93528 9 8.9 9 71 0 70 30 7 27 35 1.84
101406--101442 18 2.1 18 100 0 74 27 5 10 56 1.55
112689--112722 17 2.0 17 100 0 68 29 17 5 47 1.71
114353--114390 20 1.9 20 89 10 60 57 23 0 18 1.40
128804--128857 24 2.3 24 81 12 67 18 3 14 62 1.46
142082--142118 18 2.1 18 100 0 74 56 10 5 27 1.55
149983--150075 18 5.2 18 98 0 168 34 26 8 30 1.86
149996--150075 9 8.9 9 71 0 70 35 27 7 30 1.84
151213--151257 15 3.0 15 100 0 90 13 26 6 53 1.64
156653--156687 17 2.1 17 100 0 70 60 0 28 11 1.32
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!