NC_016433.2.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_016433.2 Sesamum indicum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153324
Tables: 1
This is table 1 of 1 ( 26 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
15799--15838 19 2.1 19 90 0 62 42 12 7 37 1.71
43000--43058 16 3.7 16 72 20 52 57 13 1 27 1.46
47562--47613 14 3.6 14 89 7 77 25 17 0 57 1.40
60959--61003 21 2.1 21 100 0 90 31 22 15 31 1.95
69288--69328 21 2.0 21 95 0 73 29 26 9 34 1.88
80478--80524 24 2.0 24 86 0 67 29 29 14 25 1.95
89369--89416 24 2.1 22 84 7 60 12 22 10 54 1.68
89391--89458 21 3.2 21 73 8 66 11 20 8 58 1.59
91794--91852 15 3.7 15 87 12 91 33 1 28 35 1.68
91794--91911 9 13.8 9 69 10 86 31 6 27 33 1.83
91803--91912 18 6.3 18 95 3 172 30 7 27 34 1.84
107690--107750 31 2.0 31 93 0 104 40 21 9 27 1.85
110055--110105 21 2.4 21 100 0 102 45 0 47 7 1.32
110345--110383 19 2.1 19 100 0 78 46 5 0 48 1.24
112046--112087 20 2.0 21 86 13 61 54 21 0 23 1.44
126923--126959 18 2.1 18 94 0 65 5 24 10 59 1.52
127226--127263 12 2.8 13 84 15 51 28 7 18 44 1.78
128390--128440 21 2.4 21 100 0 102 7 47 0 45 1.32
130745--130805 31 2.0 31 93 0 104 27 9 21 40 1.85
138759--138804 23 2.0 23 82 0 56 60 6 8 23 1.49
146583--146677 18 5.3 18 98 0 172 33 27 8 30 1.86
146583--146692 36 3.1 36 93 3 181 34 27 7 30 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
146596--146693 9 11.2 9 71 6 85 35 27 6 30 1.81
146643--146701 15 3.7 15 93 6 91 35 28 1 33 1.68
149056--149108 21 2.5 21 79 11 63 62 11 16 9 1.54
149037--149126 24 4.1 22 72 13 69 55 10 22 12 1.66
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Tables: 1
The End!