NC_016708.2.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_016708.2 Millettia pinnata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152968
Tables: 1
This is table 1 of 1 ( 44 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3--29 13 2.1 13 100 0 54 37 0 0 62 0.95
161--205 20 2.3 19 85 11 63 53 2 4 40 1.33
9133--9176 18 2.4 19 81 14 56 79 0 2 18 0.83
14331--14365 17 2.1 17 94 0 61 25 5 2 65 1.28
14508--14534 11 2.5 11 100 0 54 37 7 0 55 1.28
14535--14561 11 2.5 11 100 0 54 55 0 7 37 1.28
15184--15220 18 2.1 18 100 0 74 27 10 5 56 1.55
18502--18560 16 3.6 16 72 22 50 44 6 1 47 1.39
18503--18572 34 2.2 30 85 10 86 45 7 1 45 1.39
18515--18572 16 3.7 16 70 25 52 46 6 1 44 1.40
29449--29485 18 2.1 18 89 0 56 56 5 16 21 1.59
32292--32325 17 2.0 17 94 0 59 29 20 5 44 1.75
45548--45582 14 2.5 14 100 0 70 80 0 8 11 0.92
45548--45593 14 3.2 14 90 3 56 76 4 8 10 1.15
53170--53194 13 1.9 13 100 0 50 64 0 0 36 0.94
55257--55293 15 2.6 14 87 8 56 72 0 5 21 1.04
55612--55641 15 2.0 15 100 0 60 20 6 0 73 1.05
58988--59025 18 2.1 18 90 0 58 26 5 10 57 1.53
62296--62332 19 1.9 19 88 0 56 56 5 10 27 1.55
62680--62723 22 2.0 22 95 0 79 38 9 15 36 1.80
66554--66596 15 2.9 15 82 0 50 51 4 2 41 1.35
68249--68274 13 2.0 13 100 0 52 61 0 0 38 0.96
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
68586--68611 13 2.0 13 100 0 52 30 7 0 61 1.24
78451--78499 17 2.8 17 87 6 62 30 8 2 59 1.38
78496--78520 11 2.3 11 100 0 50 64 0 0 36 0.94
78877--78901 13 1.9 13 100 0 50 52 8 0 40 1.31
79154--79192 19 2.1 19 90 0 60 51 0 5 43 1.24
81452--81490 9 4.0 9 81 18 51 56 0 2 41 1.13
81453--81491 12 3.2 12 85 0 51 58 0 2 38 1.12
81452--81495 21 2.1 21 100 0 88 54 0 4 40 1.21
89738--89777 21 1.9 21 89 0 62 40 2 27 30 1.70
90892--90931 9 4.4 9 87 0 62 35 7 30 27 1.84
93569--93606 19 2.0 19 100 0 76 42 15 15 26 1.87
98566--98591 13 2.0 13 100 0 52 23 7 7 61 1.49
98555--98602 24 2.0 24 83 0 60 25 8 8 58 1.55
108416--108466 25 2.0 25 96 0 93 58 11 9 19 1.60
118817--118844 14 2.0 14 100 0 56 35 14 14 35 1.86
127904--127954 25 2.0 25 96 0 93 19 9 11 58 1.60
137779--137804 13 2.0 13 100 0 52 61 7 7 23 1.49
137768--137815 24 2.0 24 83 0 60 58 8 8 25 1.55
142753--142798 19 2.4 19 89 7 67 32 13 13 41 1.82
142764--142801 19 2.0 19 100 0 76 26 15 15 42 1.87
145438--145485 9 5.3 9 82 0 51 33 27 6 33 1.82
146593--146632 21 1.9 21 89 0 62 30 27 2 40 1.70
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!