NC_016736.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_016736.1 Ricinus communis cultivar Hale chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 163161 Tables: 1 2 This is table 1 of 2 ( 169 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 113--146 17 2.0 17 100 0 68 52 0 11 35 1.38 447--471 13 1.9 13 100 0 50 84 0 8 8 0.79 513--542 14 2.1 15 93 6 53 56 6 0 36 1.26 2293--2317 12 2.1 12 100 0 50 44 8 16 32 1.76 6355--6453 2 54.0 2 69 23 58 47 5 2 45 1.36 6334--6453 7 17.7 7 73 21 51 43 7 4 45 1.51 6411--6456 9 5.0 9 80 15 58 52 0 0 47 1.00 6347--6453 56 1.9 56 83 11 139 45 6 2 44 1.44 7302--7340 19 2.1 19 100 0 78 30 10 15 43 1.80 9207--9247 13 3.1 13 92 3 64 48 0 0 51 1.00 9253--9292 21 1.9 21 94 0 71 42 2 2 52 1.28 10222--10263 10 4.0 10 82 11 57 54 0 9 35 1.33 10217--10260 22 2.0 22 100 0 88 50 0 9 40 1.34 10365--10408 22 2.0 22 100 0 88 22 9 0 68 1.18 10401--10485 3 29.0 3 73 9 68 42 1 0 56 1.07 10371--10475 21 5.2 20 82 12 99 35 3 0 60 1.15 10461--10559 37 2.8 36 83 16 129 45 0 0 54 0.99 10739--10776 19 2.0 19 100 0 76 36 10 0 52 1.36 10945--10975 15 2.1 15 94 5 55 22 12 0 64 1.27 11212--11261 22 2.3 23 86 6 68 52 2 4 42 1.31 11223--11271 15 3.4 15 80 5 57 59 0 2 38 1.09 13681--13736 26 2.2 26 100 0 112 41 12 21 25 1.88 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 14341--14396 17 3.4 16 77 15 53 26 7 0 66 1.18 14376--14461 24 3.5 24 67 16 59 27 3 4 63 1.30 16995--17033 16 2.4 16 86 0 60 30 12 0 56 1.37 18981--19017 12 3.1 12 92 0 56 48 5 10 35 1.61 24233--24267 18 1.9 18 94 0 61 37 20 0 42 1.52 28746--28791 23 2.0 23 100 0 92 30 26 13 30 1.93 29037--29078 17 2.6 17 85 7 61 38 19 4 38 1.73 30859--30885 13 2.1 13 100 0 54 33 0 7 59 1.25 33173--33210 19 2.0 19 89 0 58 52 7 5 34 1.53 33200--33366 13 11.7 15 72 20 78 64 0 3 31 1.10 33198--33370 56 3.1 54 73 17 156 64 0 4 31 1.14 33291--33366 11 6.8 11 70 18 50 68 0 2 28 1.03 33366--33395 15 2.0 15 100 0 60 53 0 20 26 1.46 33436--33464 13 2.2 13 100 0 58 44 0 0 55 0.99 33500--33534 17 2.1 17 94 0 61 85 2 5 5 0.81 34181--34487 4 74.2 4 69 21 79 37 0 0 62 0.98 34185--34555 22 17.4 20 71 20 149 38 0 0 60 1.01 34229--34499 36 7.2 36 73 22 145 37 0 0 61 0.99 34257--34539 42 6.7 42 71 21 200 37 0 0 61 1.01 34268--34561 68 4.2 67 76 16 212 38 0 0 61 1.01 34180--34539 58 6.4 56 73 17 225 38 0 0 61 1.01 34258--34701 183 2.4 186 76 18 411 39 1 1 57 1.16 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 34640--34716 34 2.3 32 89 8 111 42 2 5 49 1.39 34732--34868 16 8.0 16 69 24 68 56 1 0 40 1.13 34754--34905 14 10.8 14 70 17 93 54 1 0 43 1.11 34749--34930 22 8.7 21 74 18 98 55 2 0 42 1.12 34741--34826 38 2.3 38 86 8 113 58 0 0 41 0.98 34751--34931 28 7.0 27 68 26 76 55 2 0 41 1.12 34749--34853 24 4.5 22 76 17 81 57 0 0 41 1.05 34795--34966 8 22.5 8 68 24 79 56 2 0 41 1.12 34764--34860 32 3.1 31 81 13 92 56 2 0 41 1.11 34918--34959 10 4.3 10 82 17 61 57 0 0 42 0.99 34796--34966 19 9.1 18 70 20 100 56 2 0 41 1.12 35187--35220 16 2.1 16 94 0 59 32 8 8 50 1.64 35384--35410 13 2.1 13 100 0 54 29 0 7 62 1.22 35405--35435 15 2.1 15 93 0 53 41 3 3 51 1.34 35541--35576 12 2.8 12 91 8 54 50 0 8 41 1.33 36029--36059 16 1.9 16 93 0 53 48 0 9 41 1.36 36375--36432 25 2.3 26 82 5 66 63 5 18 12 1.46 39703--39730 14 2.0 14 100 0 56 42 0 28 28 1.56 40431--40480 16 3.1 16 75 16 50 76 0 6 18 0.99 40435--40487 22 2.3 23 93 6 99 77 0 3 18 0.92 40486--40552 6 12.3 6 74 25 69 38 0 0 61 0.96 40486--40552 16 4.1 16 81 11 73 38 0 0 61 0.96 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 40486--40552 10 6.8 10 84 6 66 38 0 0 61 0.96 40562--40613 15 3.5 15 80 15 72 55 0 3 40 1.18 40579--40661 17 4.5 17 72 24 62 57 0 1 40 1.06 40579--40681 10 10.1 10 72 21 56 56 0 1 40 1.17 40677--40710 9 3.8 9 88 11 52 58 0 0 41 0.98 50772--50808 18 2.1 18 100 0 74 78 0 10 10 0.97 54975--55025 26 2.0 26 84 7 68 27 1 0 70 0.98 56187--56220 17 2.0 17 94 0 59 29 20 14 35 1.93 58373--58415 11 4.2 11 82 14 56 60 0 6 32 1.23 60499--60534 17 2.1 17 100 0 72 27 0 11 61 1.30 60755--60790 18 2.0 18 100 0 72 44 5 22 27 1.75 62677--62716 20 2.0 20 100 0 80 45 0 10 45 1.37 62702--62765 33 2.0 32 87 9 94 53 1 0 45 1.10 62762--62799 19 2.0 19 89 0 58 55 0 7 36 1.29 63476--63500 11 2.3 11 100 0 50 64 8 0 28 1.22 63529--63564 13 2.8 13 95 0 63 50 0 0 50 1.00 63568--63626 3 19.7 3 81 13 59 71 0 0 28 0.87 63573--63762 10 19.9 10 71 20 72 65 0 0 33 1.01 63563--63641 36 2.3 34 83 14 108 73 0 1 25 0.91 63644--63706 16 3.5 17 80 19 83 60 0 0 39 0.97 63634--63715 11 8.7 10 82 16 88 60 0 1 37 1.04 63668--63715 21 2.3 21 100 0 96 58 0 0 41 0.98 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 63643--63739 8 10.8 8 79 15 52 61 1 0 37 1.03 63668--63758 21 4.5 21 77 20 86 60 1 0 38 1.04 63607--63765 21 7.3 22 71 20 72 65 0 0 33 1.02 63718--63751 16 2.1 17 94 5 61 67 0 0 32 0.91 67908--67936 14 2.0 15 93 6 51 27 6 3 62 1.37 68273--68310 20 1.9 20 94 0 67 39 5 7 47 1.55 70088--70134 21 2.2 21 84 0 58 78 0 10 10 0.96 70089--70128 14 2.7 16 88 11 59 82 0 7 10 0.84 70353--70435 10 8.6 10 73 18 61 31 0 0 68 0.90 70356--70412 19 3.1 19 74 23 59 31 0 0 68 0.90 70352--70449 36 3.1 32 72 22 82 33 0 0 66 0.92 70355--70418 28 2.3 29 86 8 96 31 0 0 68 0.90 70374--70465 27 3.3 27 79 13 80 36 0 1 61 1.03 70412--70461 8 6.1 8 79 11 57 40 0 2 58 1.10 70369--70461 31 2.9 33 79 10 104 36 0 1 62 1.03 70612--70640 11 2.7 11 94 5 51 44 0 17 37 1.49 71770--71795 13 2.0 13 100 0 52 38 7 0 53 1.30 71822--71879 29 2.0 29 96 0 107 53 6 6 32 1.54 71834--71888 16 3.6 16 76 14 71 50 10 7 30 1.64 73676--73727 25 2.1 25 100 0 104 32 15 0 51 1.43 74381--74421 21 1.9 22 90 5 66 68 0 7 24 1.15 75166--75204 20 2.0 20 100 0 78 35 5 0 58 1.20 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 75198--75223 11 2.4 11 100 0 52 53 0 0 46 1.00 76703--76748 23 2.0 24 91 4 76 54 10 8 26 1.64 77045--77080 17 2.1 17 100 0 72 38 16 0 44 1.48 77499--77542 22 2.0 22 100 0 88 36 9 9 45 1.68 77588--77655 2 35.0 2 79 5 68 51 0 0 48 1.00 77588--77655 19 3.7 19 86 5 79 51 0 0 48 1.00 81042--81069 14 2.0 14 100 0 56 42 7 21 28 1.79 82333--82377 18 2.5 18 85 0 54 20 6 2 71 1.20 82375--82412 19 2.0 19 100 0 76 36 10 5 47 1.61 85064--85096 16 2.1 16 94 0 57 21 6 3 69 1.24 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2