NC_016986.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_016986.1 Ginkgo biloba chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156988
Tables: 1
This is table 1 of 1 ( 23 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
103--131 14 2.1 14 100 0 58 27 13 0 58 1.36
3806--3835 16 1.9 15 93 6 51 33 16 10 40 1.82
9158--9201 6 7.3 6 97 0 79 20 0 63 15 1.31
9709--9733 12 2.1 12 100 0 50 28 24 24 24 2.00
11841--11884 22 2.0 22 90 0 70 34 15 15 34 1.90
11932--11964 1 33.0 1 93 0 57 3 0 0 96 0.20
15901--15946 23 2.0 23 100 0 92 39 21 8 30 1.84
28977--29139 78 2.1 78 89 0 245 36 12 21 29 1.90
29121--29155 16 2.2 16 100 0 70 31 14 31 22 1.94
29269--29533 19 13.9 19 83 8 285 30 18 23 27 1.97
29575--29784 84 2.5 84 83 4 232 25 27 25 21 1.99
51659--51685 12 2.2 12 100 0 54 25 22 7 44 1.79
63139--63173 18 1.9 18 94 0 61 40 11 14 34 1.82
63990--64031 20 2.1 20 90 0 66 38 7 19 35 1.79
69587--69628 21 2.0 21 100 0 84 42 14 19 23 1.87
72682--72706 12 2.1 12 100 0 50 36 16 0 48 1.46
76197--76222 13 2.0 13 100 0 52 38 15 7 38 1.76
81300--81324 1 25.0 1 100 0 50 0 0 0 100 0.00
88113--88144 16 2.0 16 93 0 55 12 34 12 40 1.81
116769--116795 14 1.9 14 100 0 54 51 0 18 29 1.46
121142--121179 15 2.7 15 84 8 53 44 13 23 18 1.85
135244--135276 1 33.0 1 100 0 66 100 0 0 0 0.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
139450--139476 14 1.9 14 100 0 54 29 18 0 51 1.46
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Tables: 1
The End!