NC_018051.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_018051.1 Vigna unguiculata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152415
Tables: 1
This is table 1 of 1 ( 33 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1489--1520 16 2.0 16 100 0 64 31 18 6 43 1.75
4442--4478 18 2.1 18 89 0 56 21 10 10 56 1.64
7823--7851 15 1.9 15 100 0 58 41 3 6 48 1.47
7851--7890 19 2.1 19 95 0 71 50 5 7 37 1.53
8122--8221 25 4.0 25 97 0 191 32 21 12 35 1.90
9830--9870 22 1.9 21 85 5 55 24 9 4 60 1.47
16038--16073 18 2.0 18 94 0 63 52 0 19 27 1.46
17259--17302 20 2.2 20 87 0 61 40 6 0 52 1.28
17512--17536 13 1.9 13 100 0 50 16 12 0 72 1.13
17919--17950 16 1.9 17 93 6 57 15 12 9 62 1.54
27303--27330 14 2.0 14 100 0 56 21 21 0 57 1.41
32668--32703 17 2.1 17 94 0 63 50 11 11 27 1.72
34106--34145 21 1.9 21 100 0 80 35 7 15 42 1.75
36897--36946 25 2.0 25 100 0 100 24 24 8 44 1.80
41351--41383 12 2.8 12 90 4 50 75 0 6 18 1.00
54331--54360 14 2.1 14 93 0 51 43 20 0 36 1.52
55614--55639 12 2.2 12 100 0 52 38 7 0 53 1.30
64608--64633 13 2.0 13 100 0 52 30 15 0 53 1.42
66761--66804 17 2.6 17 96 0 79 47 9 15 27 1.76
66761--66811 17 3.0 17 91 0 75 49 7 15 27 1.72
69301--69326 12 2.2 12 100 0 52 38 15 15 30 1.88
81177--81260 16 5.2 16 100 0 168 17 13 23 45 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
86775--86824 21 2.4 21 86 0 73 10 22 10 58 1.60
89199--89256 9 6.4 9 83 0 80 34 6 29 29 1.83
89192--89247 18 3.1 18 100 0 112 33 5 26 33 1.79
91892--91920 10 2.9 10 100 0 58 51 0 17 31 1.45
108980--109017 20 1.9 20 84 10 51 55 23 2 18 1.55
120981--121010 15 2.0 15 100 0 60 60 0 13 26 1.34
140202--140230 10 2.9 10 100 0 58 31 17 0 51 1.45
142866--142923 9 6.4 9 83 0 80 29 29 6 34 1.83
142875--142930 18 3.1 18 100 0 112 33 26 5 33 1.79
145298--145347 21 2.4 21 86 0 73 58 10 22 10 1.60
150862--150945 16 5.2 16 100 0 168 45 23 13 17 1.84
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Tables: 1
The End!