NC_019616.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_019616.1 Vaccinium macrocarpon plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 176045
Tables: 1
This is table 1 of 1 ( 93 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4231--4274 20 2.2 20 95 0 79 52 0 0 47 1.00
9529--9561 12 2.8 12 95 0 57 39 12 3 45 1.57
18241--18278 17 2.4 16 86 8 51 50 5 28 15 1.66
19857--19906 21 2.4 21 96 3 93 42 4 4 50 1.40
20311--20354 22 2.0 22 100 0 88 45 4 22 27 1.72
24239--24275 12 3.1 12 88 0 56 24 8 10 56 1.60
32548--32577 15 2.0 15 100 0 60 20 26 20 33 1.97
34941--34975 17 2.1 17 100 0 70 34 28 5 31 1.81
36991--37018 14 2.0 14 100 0 56 21 14 7 57 1.61
37762--37786 13 1.9 13 100 0 50 60 8 8 24 1.52
81311--81901 219 2.7 219 87 2 812 30 19 18 31 1.96
83095--83226 17 8.1 17 83 13 188 44 18 0 35 1.56
83076--83226 79 1.9 79 97 0 284 45 17 1 35 1.58
83987--84042 12 4.9 12 76 12 55 12 7 25 55 1.62
84559--84625 21 3.2 21 100 0 134 37 10 22 29 1.88
84721--84794 23 3.2 23 86 0 103 22 12 16 48 1.79
87051--87166 21 5.5 21 87 0 151 15 25 25 33 1.95
87052--87166 42 2.7 42 93 0 194 14 25 26 33 1.94
92356--92417 12 5.2 12 79 14 74 14 12 8 64 1.49
92353--92417 24 2.7 24 97 0 121 13 13 7 64 1.48
95663--95702 10 4.0 10 93 6 64 50 10 0 40 1.36
97005--97046 21 2.0 21 100 0 84 38 19 9 33 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
98058--98084 13 2.1 13 100 0 54 48 14 14 22 1.81
108875--108903 12 2.4 12 100 0 58 17 13 6 62 1.52
109017--109048 16 2.0 16 100 0 64 18 25 0 56 1.42
109247--109286 9 4.3 10 84 12 50 62 0 15 22 1.32
109247--109286 14 2.9 14 88 0 53 62 0 15 22 1.32
109247--109286 5 8.6 5 81 13 50 62 0 15 22 1.32
116538--116567 15 2.0 15 100 0 60 33 20 26 20 1.97
118368--118405 12 3.1 13 81 14 53 63 7 15 13 1.51
119081--119160 27 3.0 27 98 0 151 38 0 17 43 1.49
119341--119386 16 2.6 18 77 22 53 50 15 10 23 1.75
119559--119587 12 2.4 12 100 0 58 17 13 6 62 1.52
119584--119615 16 2.0 16 100 0 64 25 0 18 56 1.42
119671--119838 19 8.8 21 73 24 119 61 0 11 27 1.30
119681--119787 13 8.4 12 69 24 53 61 0 9 28 1.27
119681--119821 4 35.0 4 69 15 78 62 0 9 27 1.27
119681--119838 43 3.6 43 70 25 116 62 0 10 27 1.28
119711--119821 54 2.1 50 90 6 168 63 0 9 27 1.26
119719--119838 35 3.3 35 91 5 177 62 0 11 25 1.29
119711--119821 15 7.5 15 74 20 92 63 0 9 27 1.26
120060--120099 9 4.3 10 84 12 50 62 0 15 22 1.32
120060--120099 14 2.9 14 88 0 53 62 0 15 22 1.32
120060--120099 5 8.6 5 81 13 50 62 0 15 22 1.32
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
121429--121468 9 4.3 10 84 12 50 62 0 15 22 1.32
121429--121468 14 2.9 14 88 0 53 62 0 15 22 1.32
121429--121468 5 8.6 5 81 13 50 62 0 15 22 1.32
122422--122446 12 2.1 12 100 0 50 24 0 8 68 1.16
122600--122848 87 2.8 87 87 4 331 34 5 31 27 1.80
122754--122788 18 1.9 18 88 0 52 48 2 37 11 1.54
125585--125622 14 2.7 14 87 0 58 31 15 7 44 1.75
128442--128473 16 2.0 16 100 0 64 18 25 0 56 1.42
130202--130241 9 4.3 10 84 12 50 62 0 15 22 1.32
130202--130241 14 2.9 14 88 0 53 62 0 15 22 1.32
130202--130241 5 8.6 5 81 13 50 62 0 15 22 1.32
130953--130977 12 2.1 12 100 0 50 20 16 8 56 1.65
131083--131114 16 2.0 16 100 0 64 18 25 0 56 1.42
131313--131352 9 4.3 10 84 12 50 62 0 15 22 1.32
131313--131352 14 2.9 14 88 0 53 62 0 15 22 1.32
131313--131352 5 8.6 5 81 13 50 62 0 15 22 1.32
138781--138823 20 2.2 20 95 0 77 41 11 4 41 1.62
149246--149285 5 8.6 5 81 13 50 22 15 0 62 1.32
149246--149285 14 2.9 14 88 0 53 22 15 0 62 1.32
149484--149515 16 2.0 16 100 0 64 56 0 25 18 1.42
149621--149645 12 2.1 12 100 0 50 56 8 16 20 1.65
150357--150396 5 8.6 5 81 13 50 22 15 0 62 1.32
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
150357--150396 14 2.9 14 88 0 53 22 15 0 62 1.32
152125--152156 16 2.0 16 100 0 64 56 0 25 18 1.42
154976--155013 14 2.7 14 87 0 58 44 7 15 31 1.75
157810--157844 18 1.9 18 88 0 52 11 37 2 48 1.54
157750--157998 87 2.8 87 87 4 331 27 31 5 34 1.80
158152--158176 12 2.1 12 100 0 50 68 8 0 24 1.16
159130--159169 5 8.6 5 81 13 50 22 15 0 62 1.32
159130--159169 14 2.9 14 88 0 53 22 15 0 62 1.32
160499--160538 5 8.6 5 81 13 50 22 15 0 62 1.32
160499--160538 14 2.9 14 88 0 53 22 15 0 62 1.32
160759--160917 4 39.0 4 68 15 78 27 10 0 62 1.28
160777--160887 15 7.5 15 74 22 92 27 9 0 63 1.26
160760--160879 35 3.3 35 91 5 177 25 11 0 62 1.29
160837--160927 19 4.5 19 71 26 71 29 10 0 59 1.32
160821--160917 43 2.2 43 79 17 103 28 9 0 61 1.26
160777--160901 15 8.4 14 71 18 51 27 9 0 63 1.25
160983--161014 16 2.0 16 100 0 64 56 18 0 25 1.42
161011--161039 12 2.4 12 100 0 58 62 6 13 17 1.52
161212--161257 16 2.6 18 77 22 53 23 10 15 50 1.75
161438--161517 27 3.0 27 98 0 151 43 17 0 38 1.49
162195--162232 12 3.2 12 82 14 51 15 13 7 63 1.51
162193--162238 24 1.9 24 86 0 65 17 13 6 63 1.50
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
164031--164060 15 2.0 15 100 0 60 20 26 20 33 1.97
171312--171351 5 8.6 5 81 13 50 22 15 0 62 1.32
171312--171351 14 2.9 14 88 0 53 22 15 0 62 1.32
171550--171581 16 2.0 16 100 0 64 56 0 25 18 1.42
171695--171723 12 2.4 12 100 0 58 62 6 13 17 1.52
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!