NC_020098.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_020098.1 Tectona grandis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153953
Tables: 1
This is table 1 of 1 ( 46 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5055--5092 19 2.0 19 100 0 76 57 10 5 26 1.53
7168--7205 11 3.4 11 86 13 51 39 0 13 47 1.42
8997--9028 15 2.1 15 94 0 55 9 0 21 68 1.17
9114--9156 21 2.0 21 100 0 86 44 9 13 32 1.76
10619--10644 13 2.0 13 100 0 52 53 0 15 30 1.42
14471--14502 13 2.5 13 94 0 55 31 9 6 53 1.58
15967--16006 19 2.1 19 95 0 71 42 12 5 40 1.64
23185--23226 20 2.1 20 100 0 84 28 0 0 71 0.86
28390--28414 12 2.1 12 100 0 50 28 8 24 40 1.83
29411--29435 12 2.1 12 100 0 50 40 0 0 60 0.97
29386--29424 17 2.3 17 90 0 60 33 7 0 58 1.26
30476--30501 13 2.0 13 100 0 52 38 7 15 38 1.76
30649--30673 12 2.1 12 100 0 50 40 8 8 44 1.63
31373--31402 15 2.0 15 100 0 60 46 0 40 13 1.43
33362--33393 15 2.1 15 100 0 64 65 12 6 15 1.44
43318--43343 13 2.0 13 100 0 52 61 7 0 30 1.24
43324--43390 19 3.5 19 75 13 59 55 2 1 40 1.24
43369--43429 24 2.7 22 85 10 70 67 3 0 29 1.07
43388--43429 12 3.5 12 76 23 52 69 4 0 26 1.08
43368--43422 15 3.6 16 83 13 71 67 1 0 30 1.01
47957--48011 15 3.7 15 72 18 60 25 12 0 61 1.31
49450--49477 14 2.0 14 100 0 56 50 7 0 42 1.30
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
51825--51852 14 2.0 14 100 0 56 21 21 7 50 1.72
60128--60159 16 2.0 16 100 0 64 25 18 18 37 1.94
61236--61275 21 1.9 21 100 0 80 32 22 15 30 1.94
61988--62014 13 2.1 13 100 0 54 22 14 0 62 1.31
69271--69311 21 2.0 21 95 0 73 29 26 9 34 1.88
71200--71244 22 2.0 23 95 4 83 31 0 0 68 0.89
72679--72704 13 2.0 13 100 0 52 76 0 7 15 0.99
90107--90161 24 2.5 22 85 8 67 14 23 12 49 1.78
90129--90196 21 3.2 21 77 8 75 11 22 10 55 1.65
92519--92636 18 6.8 17 96 2 132 28 9 26 35 1.87
92531--92639 18 6.1 18 98 0 209 28 11 27 33 1.91
100081--100119 18 2.2 17 95 4 69 25 5 5 64 1.35
100117--100166 17 3.1 17 81 16 61 30 0 24 46 1.53
108095--108155 31 2.0 31 93 0 104 40 21 9 27 1.85
112406--112444 20 2.0 20 85 10 53 56 23 0 20 1.42
123670--123703 17 2.0 17 100 0 68 35 5 23 35 1.79
127182--127216 14 2.5 14 90 0 61 0 17 5 77 0.96
131117--131177 31 2.0 31 93 0 104 27 9 21 40 1.85
139106--139155 17 3.1 18 81 16 56 46 24 0 30 1.53
139153--139191 18 2.2 17 95 4 69 64 5 5 25 1.35
146633--146741 18 6.1 18 98 0 209 33 27 11 28 1.91
146635--146753 18 6.8 17 96 2 134 35 26 9 28 1.87
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
149094--149147 21 2.6 21 82 11 74 59 11 20 9 1.59
149076--149165 21 4.1 22 75 8 67 53 11 23 12 1.70
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Tables: 1
The End!