NC_020146.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_020146.1 Equisetum hyemale chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 131760
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
27084--27116 14 2.4 14 94 0 57 6 9 0 84 0.76
39710--39833 35 3.6 35 72 18 107 26 21 16 35 1.94
40222--40361 49 2.9 48 80 5 156 41 8 10 39 1.71
40486--40663 35 5.1 35 73 13 152 25 22 15 36 1.93
40573--40730 35 4.6 35 74 12 112 27 22 15 34 1.95
40503--40720 103 2.1 103 100 0 436 27 21 15 35 1.94
40907--41028 35 3.6 33 81 10 131 25 22 15 36 1.93
40907--40994 32 2.6 34 89 8 128 26 23 17 32 1.96
41061--41463 35 11.5 35 78 8 144 24 21 14 39 1.91
41160--41562 105 3.9 105 92 3 619 24 24 14 36 1.93
41160--41658 35 14.8 35 84 4 464 25 24 14 34 1.94
41444--41657 64 3.3 64 82 2 250 28 26 16 28 1.97
41441--41677 96 2.5 95 85 2 321 29 24 16 29 1.97
41984--42315 135 2.5 130 86 6 341 27 21 16 34 1.95
41969--42309 32 10.2 34 77 8 106 26 21 17 34 1.95
41988--42212 32 6.9 32 84 8 303 28 20 16 34 1.94
42021--42315 135 2.2 131 91 5 461 26 21 16 35 1.95
41988--42401 103 4.1 103 78 7 279 27 20 16 35 1.94
42389--42544 32 4.9 32 96 0 267 28 23 24 23 1.99
42590--42646 22 2.6 22 82 0 69 35 14 15 35 1.88
43034--43378 60 5.5 60 71 16 261 37 7 10 44 1.68
43155--43187 16 2.1 16 100 0 66 36 6 12 45 1.66
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
43099--43259 76 2.1 77 89 3 245 39 6 10 44 1.64
42932--43319 136 2.9 135 90 5 558 37 7 10 44 1.67
42969--43434 196 2.3 201 92 5 793 37 7 10 44 1.68
43351--43383 16 2.1 16 100 0 66 36 6 12 45 1.66
43755--43954 85 2.4 85 86 0 274 43 11 13 32 1.79
48915--48949 14 2.5 14 100 0 70 74 14 0 11 1.08
92231--92278 23 2.1 23 84 3 62 29 4 16 50 1.64
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Tables: 1
The End!