NC_021091.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_021091.1 Vigna angularis chloroplast DNA, complete sequence
Parameters: 2 7 7 80 10 50 500
Length: 151683
Tables: 1
This is table 1 of 1 ( 40 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3181--3231 21 2.5 21 93 3 86 47 19 9 23 1.79
4494--4530 18 2.1 18 89 0 56 21 10 10 56 1.64
9774--9814 22 1.9 21 85 5 55 24 9 4 60 1.47
15508--15537 2 15.0 2 92 0 51 46 3 0 50 1.18
15979--16019 21 2.0 21 95 0 73 41 19 4 34 1.73
16029--16064 18 2.0 18 94 0 63 52 0 19 27 1.46
16872--16902 12 2.6 12 94 0 53 54 0 0 45 0.99
17391--17417 14 1.9 14 100 0 54 51 7 3 37 1.48
17541--17565 13 1.9 13 100 0 50 16 12 0 72 1.13
27371--27398 14 2.0 14 100 0 56 28 14 0 57 1.38
27478--27535 29 2.0 29 96 0 107 46 6 12 34 1.68
27480--27547 29 2.3 29 89 0 100 54 5 10 29 1.58
32778--32813 17 2.1 17 89 0 54 52 11 11 25 1.69
34249--34291 21 2.0 21 100 0 86 32 9 13 44 1.76
35466--35522 28 2.0 28 100 0 114 36 7 7 49 1.57
47666--47714 18 2.6 18 83 6 62 67 4 8 20 1.34
54393--54422 14 2.1 14 93 0 51 43 20 0 36 1.52
55579--55604 12 2.2 12 100 0 52 38 7 0 53 1.30
58612--58637 13 2.0 13 100 0 52 30 15 7 46 1.74
64984--65015 16 2.0 16 100 0 64 12 18 0 68 1.20
64983--65018 16 2.3 15 90 9 63 13 19 0 66 1.24
65013--65038 13 2.0 13 100 0 52 30 15 0 53 1.42
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
67176--67219 17 2.6 17 96 0 79 47 9 15 27 1.76
67176--67226 17 3.0 17 91 0 75 49 7 15 27 1.72
81587--81638 16 3.2 16 100 0 104 17 13 23 46 1.83
87156--87205 21 2.4 21 86 0 73 10 22 10 58 1.60
89580--89655 9 8.4 9 82 0 98 34 6 28 30 1.83
89573--89655 36 2.3 36 95 0 148 33 6 27 32 1.81
89573--89646 18 4.1 18 100 0 148 33 5 27 33 1.80
92296--92324 10 2.9 10 100 0 58 51 0 17 31 1.45
109379--109416 20 1.9 20 84 10 51 55 23 2 18 1.55
114114--114147 2 17.5 2 87 6 52 47 2 0 50 1.16
120294--120356 21 3.0 21 100 0 126 47 14 4 33 1.65
121428--121457 15 2.0 15 100 0 60 60 0 13 26 1.34
123134--123165 15 2.1 15 100 0 64 6 12 0 81 0.87
140644--140672 10 2.9 10 100 0 58 31 17 0 51 1.45
143313--143388 9 8.4 9 82 0 98 30 28 6 34 1.83
143322--143395 18 4.1 18 100 0 148 33 27 5 33 1.80
145763--145812 21 2.4 21 86 0 73 58 10 22 10 1.60
151330--151381 16 3.2 16 100 0 104 46 23 13 17 1.83
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Tables: 1
The End!