NC_022417.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_022417.1 Cocos nucifera chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154731
Tables: 1
This is table 1 of 1 ( 75 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3749--3820 12 6.1 12 81 14 87 68 1 0 30 0.99
3748--3815 20 3.2 20 76 17 66 66 1 0 32 1.01
8702--8732 16 2.0 15 93 6 53 45 3 0 51 1.17
8819--8844 10 2.6 10 100 0 52 42 0 0 57 0.98
10124--10154 16 1.9 16 93 0 53 25 19 6 48 1.72
12726--12775 17 2.6 21 72 24 63 12 8 10 70 1.35
12731--12774 17 2.6 17 100 0 88 11 6 9 72 1.27
16838--16893 28 2.0 28 96 0 103 30 10 0 58 1.32
16988--17017 15 2.0 15 100 0 60 26 13 20 40 1.89
27487--27529 17 2.6 17 74 3 52 48 0 16 34 1.46
28816--28848 17 1.9 17 93 0 57 12 3 0 84 0.72
28847--28904 21 2.9 21 87 7 77 56 0 0 43 0.99
28846--28915 18 3.7 18 81 12 70 54 1 0 44 1.09
29039--29077 15 2.6 15 87 0 51 35 12 15 35 1.86
30510--30547 18 2.1 18 90 0 58 42 18 13 26 1.87
31071--31102 15 2.1 15 100 0 64 43 6 12 37 1.68
31427--31467 20 2.0 20 100 0 82 43 9 14 31 1.78
35106--35150 12 3.8 12 100 0 90 42 24 0 33 1.55
45147--45185 16 2.4 16 95 0 69 43 5 2 48 1.38
45175--45221 9 5.1 9 78 14 51 38 2 8 51 1.45
45152--45247 28 3.5 28 80 8 92 40 5 4 50 1.44
45272--45312 21 2.0 21 95 0 73 31 7 0 60 1.24
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
45350--45374 12 2.1 12 100 0 50 48 0 0 52 1.00
47233--47266 13 2.5 13 90 4 50 79 2 5 11 1.02
56251--56282 16 2.0 16 100 0 64 37 25 0 37 1.56
58892--58919 11 2.5 11 100 0 56 35 17 0 46 1.49
58919--58957 14 2.8 14 96 0 69 43 7 0 48 1.31
58984--59054 30 2.4 30 81 11 92 54 0 1 43 1.08
59016--59091 22 3.5 22 84 7 95 57 0 0 42 0.98
59011--59086 12 6.7 12 72 15 72 57 0 0 42 0.98
64498--64566 5 14.8 5 76 11 58 57 7 0 34 1.26
64498--64566 14 4.6 14 83 16 93 57 7 0 34 1.26
64518--64559 19 2.2 19 100 0 84 52 9 0 38 1.34
64504--64566 33 1.9 33 100 0 126 55 7 0 36 1.29
64518--64574 19 3.0 19 89 5 62 56 10 0 33 1.34
66975--67064 21 4.8 19 81 16 93 34 8 0 56 1.30
66986--67064 21 4.0 21 90 6 112 34 8 0 56 1.30
66975--67029 15 3.3 16 87 12 76 34 7 0 58 1.26
67484--67522 14 2.8 14 92 0 69 46 12 2 38 1.56
76126--76170 20 2.3 19 92 7 81 33 11 15 40 1.83
79155--79203 24 2.0 24 96 0 89 28 30 12 28 1.93
81555--81633 28 2.8 28 86 7 108 50 0 11 37 1.38
81652--81683 15 2.1 16 94 5 57 34 6 6 53 1.51
82105--82178 16 4.4 17 77 11 71 18 2 0 78 0.87
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
82112--82171 23 2.5 24 83 5 77 18 1 0 80 0.80
82155--82185 15 2.1 15 93 0 53 25 3 0 70 1.02
82734--82773 20 2.0 20 100 0 80 40 25 5 30 1.77
86932--86962 15 2.1 15 100 0 62 19 32 0 48 1.49
89204--89265 21 2.8 22 90 7 90 14 25 11 48 1.77
89225--89272 21 2.3 21 92 0 78 12 31 8 47 1.71
91622--91712 15 5.6 17 74 16 86 32 6 24 36 1.81
91629--91705 24 3.2 24 100 0 154 33 7 24 33 1.84
99857--100000 6 24.2 6 98 0 272 33 0 15 50 1.49
104492--104516 11 2.3 11 100 0 50 28 20 16 36 1.93
117443--117486 15 2.9 15 83 6 54 45 0 0 54 0.99
117439--117486 17 2.9 17 79 14 57 45 0 0 54 0.99
117474--117595 3 42.3 3 74 16 55 66 0 1 31 1.07
117473--117594 8 16.2 8 69 16 55 65 0 1 31 1.08
117474--117595 11 11.6 11 71 15 53 66 0 1 31 1.07
117482--117539 22 2.6 22 81 7 73 79 0 0 20 0.74
117474--117539 14 4.9 14 75 5 64 77 0 0 22 0.77
117474--117539 33 1.9 35 87 6 100 77 0 0 22 0.77
117558--117604 14 3.3 15 82 8 53 57 2 2 38 1.23
117552--117614 32 1.9 33 84 9 85 57 3 1 38 1.24
117587--117634 20 2.4 20 96 0 87 56 8 0 35 1.30
118220--118260 14 2.8 14 92 7 64 43 4 7 43 1.53
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
118230--118272 14 3.1 14 89 0 50 39 6 6 46 1.58
134170--134194 11 2.3 11 100 0 50 36 16 20 28 1.93
138686--138829 6 24.2 6 98 0 272 50 15 0 33 1.49
146978--147052 9 9.0 9 66 16 54 33 25 8 33 1.85
146974--147064 15 5.6 17 74 16 86 36 24 6 32 1.81
146981--147057 24 3.2 24 100 0 154 33 24 7 33 1.84
149414--149482 21 3.1 22 85 8 86 49 10 27 13 1.73
149421--149482 21 2.7 23 90 7 92 48 11 25 14 1.77
151724--151754 15 2.1 15 100 0 62 48 0 32 19 1.49
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!