NC_022850.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_022850.1 Setaria italica plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 135516
Tables: 1
This is table 1 of 1 ( 22 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6301--6336 16 2.2 16 100 0 72 47 19 5 27 1.72
15080--15211 67 2.0 67 86 0 183 29 15 26 28 1.96
17417--17445 14 2.0 15 93 6 51 75 0 17 6 1.01
19797--19828 13 2.5 13 94 0 55 50 6 12 31 1.65
25415--25455 21 2.0 21 100 0 82 26 29 14 29 1.95
26308--26336 15 1.9 15 100 0 58 27 34 17 20 1.95
27382--27443 21 3.0 21 95 0 106 38 11 35 14 1.82
27524--27603 21 3.8 21 73 6 81 37 15 27 20 1.92
27503--27592 42 2.1 42 85 4 119 44 13 22 20 1.85
27688--27767 33 2.4 32 80 12 90 40 11 32 16 1.84
27751--27785 12 2.9 12 100 0 70 42 17 31 8 1.79
31119--31159 20 2.0 20 90 0 64 36 0 24 39 1.56
33092--33123 16 2.0 16 100 0 64 31 0 0 68 0.90
43703--43754 26 2.0 26 100 0 104 11 38 11 38 1.78
50588--50619 15 2.1 15 100 0 64 40 0 12 46 1.42
51652--51696 22 2.0 22 100 0 90 55 22 8 13 1.65
64975--65095 21 5.8 21 84 3 154 39 24 4 30 1.77
64975--65095 42 2.9 42 88 2 172 39 24 4 30 1.77
65383--65441 21 2.8 21 75 10 66 49 22 10 18 1.77
69902--69945 22 2.0 23 90 4 72 52 2 13 31 1.53
90536--90577 14 3.1 14 93 3 68 28 14 2 54 1.52
124843--124873 14 2.2 14 94 0 53 54 3 16 25 1.56
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!