NC_023084.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_023084.1 Camellia oleifera plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156971
Tables: 1
This is table 1 of 1 ( 30 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4547--4593 25 2.0 25 83 8 62 68 6 4 21 1.30
6462--6510 23 2.1 24 85 11 66 38 0 2 59 1.09
6463--6510 24 2.0 24 84 8 62 37 0 2 60 1.09
6502--6552 22 2.3 23 80 10 61 68 5 3 21 1.27
34242--34287 10 4.9 9 84 15 58 86 2 2 8 0.72
34242--34289 19 2.6 18 87 12 62 87 2 2 8 0.70
48779--48809 16 1.9 16 100 0 62 58 6 3 32 1.40
53135--53165 16 1.9 16 93 0 53 25 6 6 61 1.45
56639--56670 1 32.0 1 100 0 64 0 0 0 100 0.00
60640--60693 1 54.0 1 84 0 63 9 0 0 90 0.45
60640--60700 16 3.9 16 81 14 74 11 0 1 86 0.63
60640--60693 17 3.2 17 81 2 74 9 0 0 90 0.45
60640--60700 33 1.9 31 90 6 95 11 0 1 86 0.63
64008--64037 14 2.1 14 100 0 60 43 13 6 36 1.70
84155--84198 18 2.4 19 85 7 56 34 0 4 61 1.16
91285--91339 24 2.5 22 85 8 67 14 23 12 49 1.78
91307--91374 21 3.2 21 77 8 75 11 22 8 57 1.61
93728--93831 18 5.9 17 94 3 86 29 11 26 31 1.92
93743--93834 18 5.1 18 97 0 166 29 10 27 32 1.91
101173--101219 22 2.2 22 88 7 71 19 2 0 78 0.85
101692--101728 18 2.1 18 89 0 56 18 13 8 59 1.58
114248--114289 20 2.0 21 86 13 61 54 21 0 23 1.44
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
129444--129499 15 3.9 14 75 15 51 1 23 3 71 1.11
129935--129977 18 2.4 18 84 7 52 9 4 4 81 0.97
129944--129979 18 1.9 19 94 5 65 8 2 5 83 0.89
130747--130780 16 2.1 17 88 5 52 26 11 2 58 1.47
142080--142131 23 2.3 23 86 6 70 75 0 1 23 0.91
149469--149560 18 5.1 18 97 0 166 32 27 10 29 1.91
149476--149575 18 5.8 17 94 3 87 33 27 11 29 1.91
151929--152018 21 4.1 22 75 8 76 54 10 23 12 1.67
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Tables: 1
The End!