NC_023092.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_023092.1 Liquidambar formosana chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160410
Tables: 1
This is table 1 of 1 ( 43 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4465--4516 16 2.9 18 83 13 72 71 7 9 11 1.32
6628--6659 15 2.1 15 94 0 55 62 12 3 21 1.43
11344--11378 15 2.3 15 90 0 52 60 0 0 40 0.97
15618--15670 13 4.1 13 100 0 106 39 15 22 22 1.91
22338--22367 15 2.0 15 93 0 51 33 10 23 33 1.88
31293--31322 15 2.0 15 93 0 51 40 23 3 33 1.71
32218--32266 20 2.5 20 96 0 89 16 20 0 63 1.31
33681--33713 15 2.1 16 88 5 50 42 0 0 57 0.98
33699--33746 24 2.0 24 100 0 96 54 0 4 41 1.20
33752--33818 13 5.1 14 71 14 61 65 0 4 29 1.12
33735--33820 26 3.4 26 88 6 124 65 0 5 29 1.16
34358--34387 13 2.2 14 94 5 53 43 0 10 46 1.37
34690--34714 13 1.9 13 100 0 50 56 0 8 36 1.29
35447--35495 18 2.7 19 87 12 61 69 0 14 16 1.19
38453--38494 21 2.0 21 100 0 84 38 14 19 28 1.90
38888--38913 13 2.0 13 100 0 52 15 23 15 46 1.83
39429--39456 14 2.0 14 100 0 56 42 0 0 57 0.99
39535--39564 14 2.1 14 100 0 60 36 0 13 50 1.42
49919--49951 16 1.9 18 88 11 52 63 0 12 24 1.28
50150--50207 17 3.4 17 81 11 73 48 6 1 43 1.40
50818--50860 21 2.0 21 100 0 86 51 0 34 13 1.42
66137--66170 17 2.0 17 100 0 68 52 5 23 17 1.66
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
71395--71435 20 2.0 20 100 0 82 65 4 0 29 1.13
74287--74319 16 2.1 16 100 0 66 24 33 0 42 1.55
83986--84031 24 1.9 24 86 0 65 23 32 17 26 1.97
87208--87238 15 2.1 14 94 5 53 29 3 12 54 1.53
93715--93803 21 4.1 21 81 5 90 12 23 10 53 1.68
95770--95799 15 2.0 15 100 0 60 26 13 13 46 1.80
96190--96249 18 3.3 18 100 0 120 28 11 26 33 1.91
104340--104377 18 2.1 18 95 0 67 23 7 5 63 1.42
112512--112577 32 2.1 32 97 0 123 40 24 9 25 1.84
117540--117575 18 2.0 18 100 0 72 55 11 11 22 1.66
119043--119067 12 2.1 12 100 0 50 40 8 8 44 1.63
119276--119309 17 1.9 18 88 5 52 29 14 0 55 1.40
123384--123432 21 2.2 23 78 7 57 40 2 8 48 1.44
126733--126759 14 1.9 14 100 0 54 37 7 18 37 1.79
134085--134128 9 5.2 8 82 17 54 13 11 0 75 1.06
134091--134128 18 2.1 18 100 0 76 15 10 0 73 1.09
136779--136844 32 2.1 32 97 0 123 25 9 24 40 1.84
144979--145016 18 2.1 18 95 0 67 63 5 7 23 1.42
153107--153166 18 3.3 18 100 0 120 33 26 11 28 1.91
153557--153586 15 2.0 15 100 0 60 46 13 13 26 1.80
155553--155641 21 4.1 21 81 5 90 53 10 23 12 1.68
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Tables: 1
The End!