NC_023215.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_023215.1 Gossypium herbaceum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160140
Tables: 1
This is table 1 of 1 ( 72 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5497--5530 15 2.3 15 100 0 68 38 0 26 35 1.57
6535--6574 19 2.1 19 90 0 62 30 15 2 52 1.55
8264--8292 14 2.1 14 100 0 58 34 0 13 51 1.42
8288--8359 23 3.3 23 92 7 116 37 2 8 51 1.47
8281--8362 23 4.0 20 84 12 112 37 3 8 50 1.51
8411--8451 21 2.0 21 85 0 55 36 12 9 41 1.76
9068--9092 11 2.3 11 100 0 50 64 8 0 28 1.22
13318--13367 14 3.5 14 78 13 57 28 10 2 60 1.40
13604--13648 23 2.0 22 91 4 72 66 4 11 17 1.38
36877--36922 23 2.0 23 100 0 92 30 13 21 34 1.91
38006--38082 33 2.4 33 85 6 106 45 3 0 50 1.20
38062--38101 20 2.0 20 100 0 80 60 5 0 35 1.19
38077--38150 17 4.5 16 78 13 71 64 4 2 28 1.25
38087--38164 32 2.5 30 82 14 79 64 2 2 30 1.21
38143--38225 3 28.3 3 72 22 61 62 0 4 32 1.16
38144--38227 12 6.9 12 75 16 75 61 0 4 33 1.17
38120--38225 15 7.6 14 79 17 91 63 0 4 31 1.21
38144--38186 11 3.8 11 87 3 59 60 0 2 37 1.10
38146--38199 29 2.0 29 85 10 78 61 0 3 35 1.14
38143--38227 37 2.4 37 81 12 101 62 0 4 32 1.16
38249--38289 14 2.9 14 88 3 64 58 0 0 41 0.98
43989--44019 15 2.1 15 100 0 62 19 12 0 67 1.22
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
45639--45689 16 3.2 16 97 0 93 21 11 13 52 1.72
48288--48385 25 4.0 24 71 20 87 64 1 4 30 1.19
48302--48331 13 2.3 13 94 0 51 66 0 0 33 0.92
48295--48408 19 5.7 19 74 20 60 61 0 4 33 1.22
48288--48408 25 5.2 22 71 17 77 62 0 4 32 1.20
48376--48423 14 3.1 17 69 25 52 62 0 2 35 1.07
48798--48825 13 2.2 13 100 0 56 46 0 7 46 1.30
49393--49449 27 2.1 28 90 3 89 43 7 7 42 1.58
49941--49983 18 2.4 18 88 0 59 69 6 13 9 1.35
49995--50043 18 2.7 18 100 0 98 40 0 59 0 0.98
49977--50032 10 5.5 11 76 20 50 42 0 57 0 0.99
49985--50044 10 6.4 10 70 27 51 38 0 61 0 0.96
54733--54763 15 2.1 15 93 0 53 16 16 19 48 1.81
58165--58194 15 2.0 15 93 0 51 56 0 0 43 0.99
58213--58262 16 2.8 17 85 11 57 36 8 0 56 1.29
58272--58313 21 2.0 21 100 0 84 33 0 0 66 0.92
58278--58358 11 7.2 11 72 15 51 34 1 1 62 1.11
58343--58379 19 1.9 19 88 0 56 24 5 0 70 1.08
62930--62963 17 2.0 17 94 0 59 38 2 11 47 1.55
70139--70186 23 2.3 20 78 21 62 31 16 6 45 1.72
70145--70189 23 2.0 23 100 0 90 31 13 6 48 1.68
71970--72011 20 2.2 19 95 4 75 33 4 0 61 1.17
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
71987--72039 25 2.1 25 82 6 63 35 1 0 62 1.06
72016--72042 13 2.1 13 100 0 54 44 0 0 55 0.99
72044--72081 15 2.5 15 95 0 67 73 5 0 21 1.02
72195--72233 21 1.9 21 94 5 71 30 25 10 33 1.89
74763--74787 12 2.1 12 100 0 50 44 0 8 48 1.32
89325--89353 14 2.1 14 100 0 58 27 13 6 51 1.66
93520--93588 21 3.3 21 87 2 95 11 24 8 55 1.64
95954--96047 18 5.4 18 92 3 131 28 9 25 36 1.87
104296--104323 14 2.0 14 100 0 56 14 14 0 71 1.15
104320--104390 5 13.2 6 82 14 68 32 2 15 49 1.59
104321--104394 11 7.5 11 69 23 58 32 2 16 48 1.60
104312--104367 27 2.1 27 100 0 112 28 7 10 53 1.62
104349--104394 20 2.2 21 92 7 85 32 0 19 47 1.50
112563--112624 32 1.9 32 96 0 115 38 22 9 29 1.86
114397--114439 17 2.4 19 84 15 72 58 0 0 41 0.98
114476--114517 21 2.0 21 81 9 50 69 4 2 23 1.20
118947--118990 21 2.1 21 83 8 54 63 2 9 25 1.35
136226--136287 32 1.9 32 96 0 115 29 9 22 38 1.86
144456--144501 20 2.2 21 92 7 85 47 19 0 32 1.50
144456--144502 11 4.5 11 87 12 73 46 19 0 34 1.50
144483--144538 27 2.1 27 100 0 112 53 10 7 28 1.62
144460--144530 5 13.2 6 80 16 68 49 15 2 32 1.59
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
144527--144554 14 2.0 14 100 0 56 71 0 14 14 1.15
152803--152896 18 5.4 18 92 3 131 36 25 9 28 1.87
152803--152883 9 9.0 9 70 0 54 34 27 9 28 1.89
155262--155350 21 4.1 21 84 5 90 53 10 23 12 1.68
155262--155330 21 3.3 21 87 2 95 55 8 24 11 1.64
159497--159525 14 2.1 14 100 0 58 51 6 13 27 1.66
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Tables: 1
The End!