NC_023798.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_023798.1 Prunus mume isolate BJFU1210120008 plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157712
Tables: 1
This is table 1 of 1 ( 56 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4984--5030 22 2.1 22 100 0 94 17 19 4 59 1.53
4984--5038 22 2.5 22 93 3 83 18 18 3 60 1.51
6903--6994 8 12.6 7 71 23 50 41 0 2 56 1.11
6928--6994 19 3.6 18 78 15 73 43 0 0 56 0.99
6943--6994 11 4.8 11 77 18 56 44 0 0 55 0.99
6943--6991 8 5.8 8 80 19 55 44 0 0 55 0.99
9448--9478 11 2.7 11 95 5 53 38 3 0 58 1.15
9712--9769 20 2.8 20 89 2 80 56 1 0 41 1.09
13085--13118 17 2.0 17 100 0 68 41 11 17 29 1.85
13787--13820 14 2.4 14 100 0 68 50 0 0 50 1.00
21056--21085 15 2.0 15 93 0 51 36 13 16 33 1.88
21061--21090 15 2.0 15 93 0 51 33 13 23 30 1.93
27635--27662 13 2.2 13 100 0 56 39 0 21 39 1.54
28620--28674 17 3.1 17 87 10 83 32 5 1 60 1.30
28627--28666 19 2.1 19 100 0 80 37 5 0 57 1.21
33738--33774 15 2.6 15 87 8 51 67 0 8 24 1.17
37729--37770 18 2.3 18 100 0 84 59 4 0 35 1.19
48003--48053 13 4.1 12 75 25 52 64 0 1 33 1.05
48003--48047 13 3.8 13 77 19 53 66 0 0 33 0.92
48605--48630 13 2.0 13 100 0 52 46 0 23 30 1.53
50030--50096 13 5.2 13 94 0 116 44 1 5 47 1.36
51187--51218 16 2.0 16 100 0 64 18 12 12 56 1.67
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
52689--52860 12 15.9 11 67 20 78 54 3 1 40 1.25
52695--52857 15 11.4 15 68 18 64 55 3 1 40 1.23
52690--52747 20 3.0 20 83 16 77 53 5 0 41 1.23
52698--52866 38 4.5 38 71 12 111 54 2 1 41 1.23
52779--52864 16 5.2 17 75 15 74 47 3 0 48 1.18
52875--52925 22 2.3 22 100 0 102 33 3 0 62 1.13
52871--52930 22 2.4 26 73 26 74 31 3 0 65 1.09
53716--53784 34 2.0 34 100 0 138 31 5 11 50 1.62
53723--53776 16 3.2 16 70 10 54 33 5 9 51 1.57
53729--53787 18 3.4 18 72 9 68 37 5 6 50 1.51
58463--58525 25 2.5 24 80 16 74 26 1 3 68 1.14
65161--65192 16 2.0 16 93 0 55 40 0 9 50 1.35
67268--67302 17 2.1 17 88 0 52 34 5 11 48 1.63
71512--71548 15 2.5 15 95 0 65 56 0 5 37 1.22
76092--76127 18 2.0 18 100 0 72 38 5 11 44 1.63
77935--77980 21 2.1 22 96 4 85 26 13 19 41 1.88
90824--90891 21 3.2 21 82 0 82 11 22 7 58 1.57
93243--93294 18 2.9 18 94 0 95 32 7 28 30 1.85
96269--96319 17 3.1 16 78 16 59 52 7 0 39 1.30
96274--96311 16 2.5 16 87 8 53 50 5 0 44 1.24
100812--100837 12 2.2 12 100 0 52 7 7 0 84 0.77
109534--109597 31 2.1 31 93 0 110 40 25 7 26 1.82
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
115713--115771 27 2.2 27 96 0 109 28 11 10 49 1.72
115936--115990 3 18.0 3 77 3 56 41 1 0 56 1.10
115915--116008 37 2.5 38 80 11 97 46 1 0 52 1.07
116220--116256 18 2.1 17 95 5 65 56 5 2 35 1.36
120843--120887 22 2.0 22 100 0 90 42 4 17 35 1.70
133914--133977 31 2.1 31 93 0 110 26 7 25 40 1.82
142674--142699 12 2.2 12 100 0 52 84 0 7 7 0.77
147194--147244 17 3.1 18 75 16 56 41 0 7 50 1.31
147200--147244 16 2.8 16 83 6 56 44 0 6 48 1.29
147200--147254 15 3.6 16 78 9 62 47 0 5 47 1.25
150217--150268 18 2.9 18 94 0 95 30 28 7 32 1.85
152621--152709 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!