NC_024019.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_024019.1 Dendrobium officinale chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152221
Tables: 1
This is table 1 of 1 ( 54 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3436--3471 9 4.0 9 92 7 56 55 0 0 44 0.99
4662--4737 30 2.5 29 83 10 82 71 3 17 7 1.26
6472--6497 13 2.0 13 100 0 52 38 0 7 53 1.30
6757--6792 6 6.0 6 87 12 56 19 47 0 33 1.50
6759--6794 18 2.0 18 100 0 72 22 44 0 33 1.53
7939--7964 13 2.0 13 100 0 52 46 7 7 38 1.61
8926--8971 22 2.1 22 84 8 58 45 2 15 36 1.58
15790--15814 12 2.1 12 100 0 50 48 0 16 36 1.46
27628--27652 12 2.1 12 100 0 50 16 24 8 52 1.70
29323--29354 15 2.1 15 100 0 64 28 12 6 53 1.62
29353--29377 11 2.3 11 100 0 50 28 8 0 64 1.22
29469--29502 10 3.3 10 91 4 50 29 0 17 52 1.45
30241--30272 10 3.4 10 87 12 50 53 9 9 28 1.64
33094--33179 44 2.0 43 97 2 163 56 6 12 23 1.60
46947--46988 9 4.4 10 80 19 54 42 7 0 50 1.30
46987--47013 13 2.1 13 100 0 54 55 0 14 29 1.40
47953--47982 14 2.1 14 100 0 60 43 0 30 26 1.55
50271--50308 19 2.0 19 100 0 76 21 21 21 36 1.95
54060--54088 15 1.9 15 100 0 58 24 13 0 62 1.32
56232--56259 14 2.0 14 100 0 56 35 21 0 42 1.53
68039--68068 15 2.0 15 93 0 51 63 13 16 6 1.50
68075--68118 21 2.1 21 86 0 61 34 25 9 31 1.87
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
69158--69188 15 2.1 15 100 0 62 9 19 0 70 1.14
74576--74627 19 2.8 19 77 13 63 42 0 7 50 1.31
74696--74724 13 2.2 13 100 0 58 24 0 6 68 1.13
74777--74845 14 4.6 16 77 18 60 62 1 11 24 1.37
80359--80407 24 2.0 24 84 0 62 30 22 10 36 1.87
83395--83421 13 2.1 13 100 0 54 22 7 0 70 1.12
85289--85319 12 2.6 12 100 0 62 48 9 12 29 1.73
86385--86440 24 2.3 24 96 0 103 37 7 25 30 1.82
90395--90430 18 2.0 18 100 0 72 50 11 11 27 1.72
92988--93059 18 3.8 18 76 23 69 33 5 25 36 1.79
92995--93047 24 2.2 24 100 0 106 33 7 24 33 1.84
93001--93063 9 7.3 9 74 13 53 33 4 26 34 1.78
92995--93060 24 2.8 24 90 4 89 33 6 25 34 1.81
101330--101356 14 1.9 14 100 0 54 18 14 0 66 1.25
101359--101418 14 4.4 14 82 17 65 35 6 1 56 1.35
101393--101426 14 2.4 14 95 0 59 29 14 0 55 1.40
111949--111984 18 2.0 18 100 0 72 55 0 33 11 1.35
112552--112585 13 2.6 14 90 9 54 50 0 11 38 1.39
113431--113479 19 2.7 18 81 12 55 14 8 6 71 1.29
113419--113485 10 7.0 10 74 6 59 16 10 4 68 1.34
115384--115420 19 1.9 19 88 0 56 56 5 8 29 1.51
120595--120620 13 2.0 13 100 0 52 46 15 7 30 1.74
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
135905--135938 14 2.4 14 95 0 59 55 0 14 29 1.40
135913--135972 14 4.4 14 80 19 65 56 1 6 35 1.35
135896--135969 38 2.0 37 81 7 87 54 2 9 33 1.47
135975--136001 14 1.9 14 100 0 54 66 0 14 18 1.25
144268--144330 9 7.3 9 74 13 53 34 26 4 33 1.78
144280--144336 24 2.4 24 96 0 96 35 24 7 33 1.82
144272--144307 18 2.0 18 100 0 72 33 27 5 33 1.80
146901--146936 18 2.0 18 100 0 72 27 11 11 50 1.72
150891--150946 24 2.3 24 96 0 103 30 25 7 37 1.82
152012--152042 12 2.6 12 100 0 62 29 12 9 48 1.73
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Tables: 1
The End!