NC_024261.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_024261.1 Hyoscyamus niger chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155720
Tables: 1
This is table 1 of 1 ( 24 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3687--3724 19 2.0 19 100 0 76 42 10 21 26 1.85
6329--6402 37 2.1 34 82 12 87 58 0 0 41 0.98
16518--16549 17 1.9 16 93 6 55 18 9 0 71 1.12
33040--33083 23 2.0 22 90 4 70 36 9 2 52 1.46
43174--43231 19 3.3 19 63 22 54 41 0 6 51 1.28
43174--43239 33 2.0 33 100 0 132 42 0 6 51 1.26
62180--62214 17 2.1 17 100 0 70 60 11 11 17 1.59
68758--68787 10 3.0 10 100 0 60 50 10 0 40 1.36
69994--70034 21 2.0 21 90 0 64 29 24 9 36 1.87
70329--70360 16 2.0 16 93 0 55 31 6 21 40 1.78
74191--74236 23 2.0 23 100 0 92 13 30 17 39 1.87
90930--91001 24 3.1 24 92 4 112 12 23 11 52 1.71
90930--91036 24 4.8 22 83 6 92 13 24 11 51 1.73
90952--91043 21 4.2 21 78 9 78 11 22 9 55 1.65
93405--93482 18 4.3 18 91 0 129 32 8 25 33 1.87
93405--93459 9 6.1 9 76 0 56 32 7 27 32 1.84
108904--108968 32 2.0 32 93 0 112 43 21 9 26 1.82
113594--113632 20 2.0 20 85 10 53 56 23 0 20 1.42
132858--132922 32 2.0 32 93 0 112 26 9 21 43 1.82
148344--148421 9 8.7 9 68 0 57 33 25 8 32 1.87
148344--148421 18 4.3 18 91 0 129 33 25 8 32 1.87
150801--150854 21 2.6 21 82 11 74 59 11 20 9 1.59
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
150784--150853 21 3.4 19 72 16 59 57 8 22 11 1.61
150825--150896 24 3.1 24 92 4 112 52 11 23 12 1.71
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Tables: 1
The End!