NC_024469.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_024469.1 Raphanus sativus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153368
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1880--1924 23 2.0 23 82 8 56 53 4 4 37 1.41
1880--1925 24 2.0 23 82 4 56 52 4 4 39 1.41
4678--4712 18 1.9 18 88 0 52 45 2 5 45 1.41
6219--6254 18 2.0 18 100 0 72 38 16 5 38 1.72
7855--7915 26 2.2 26 85 8 77 31 4 0 63 1.15
7907--7970 28 2.4 25 78 19 67 46 1 0 51 1.10
31363--31395 17 2.0 17 94 5 59 48 6 12 33 1.65
35420--35464 23 2.0 23 86 8 65 51 0 13 35 1.41
35423--35519 22 4.3 23 71 18 71 50 1 10 38 1.43
35480--35555 2 40.0 2 71 15 54 50 1 2 46 1.24
35499--35557 13 4.6 13 75 12 59 47 1 0 50 1.11
36516--36566 22 2.3 22 93 0 84 54 0 0 45 0.99
45836--45882 17 2.8 17 75 21 53 21 6 0 72 1.07
58431--58491 30 2.0 30 96 0 113 31 3 13 52 1.56
62075--62120 17 2.6 18 77 19 51 34 8 4 52 1.52
62124--62170 23 2.0 23 88 12 69 48 0 4 46 1.21
66778--66817 21 1.9 21 89 0 62 32 22 10 35 1.87
70971--71009 15 2.5 15 87 4 60 48 5 0 46 1.24
78882--78914 16 2.0 17 88 5 50 21 12 0 66 1.23
81727--81751 12 2.1 12 100 0 50 8 8 0 84 0.79
83883--83921 20 2.0 20 89 0 60 33 10 12 43 1.77
88093--88161 21 3.3 21 86 8 88 13 23 8 55 1.65
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
90505--90560 18 3.3 17 87 7 71 32 7 23 37 1.82
90515--90560 18 2.6 18 92 0 74 32 8 23 34 1.86
106719--106780 32 1.9 32 96 0 115 41 24 9 24 1.84
122784--122844 30 2.0 31 96 3 115 34 13 3 49 1.58
129759--129820 32 1.9 32 96 0 115 24 9 24 41 1.84
145979--146024 18 2.6 18 92 0 74 34 23 8 32 1.86
145979--146034 18 3.3 17 87 7 62 37 23 7 32 1.82
148378--148446 21 3.3 21 86 8 88 55 8 23 13 1.65
148405--148459 21 2.4 24 88 8 80 49 12 21 16 1.79
152618--152656 20 2.0 20 89 0 60 43 12 10 33 1.77
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Tables: 1
The End!