NC_024728.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_024728.1 Fritillaria cirrhosa chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151991
Tables: 1
This is table 1 of 1 ( 25 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3296--3323 14 2.0 14 100 0 56 42 7 21 28 1.79
7549--7582 17 2.0 17 100 0 68 52 5 0 41 1.25
27813--27872 26 2.3 26 77 11 68 48 1 1 48 1.21
27831--27870 13 3.1 13 89 10 64 50 0 0 50 1.00
30183--30229 13 3.6 13 94 0 67 53 8 2 36 1.44
30175--30214 22 1.9 20 90 10 62 52 12 0 35 1.39
30360--30384 11 2.3 11 100 0 50 44 0 0 56 0.99
44087--44132 23 2.0 23 83 8 58 56 6 0 36 1.25
44267--44307 17 2.4 17 84 8 57 51 0 0 48 1.00
44281--44307 12 2.2 12 100 0 54 48 0 0 51 1.00
45908--45933 13 2.0 13 100 0 52 46 15 0 38 1.46
54030--54059 14 2.1 14 93 0 51 53 3 6 36 1.44
54174--54206 15 2.1 16 88 5 50 21 0 6 72 1.05
56420--56481 25 2.4 25 75 5 61 43 6 1 48 1.38
58454--58512 29 2.0 29 100 0 118 38 13 10 37 1.79
76884--76932 24 2.0 24 88 0 71 26 32 14 26 1.94
79328--79364 18 2.1 18 89 0 56 21 2 10 64 1.37
86607--86654 21 2.3 21 96 0 87 12 33 8 45 1.72
88947--89027 24 3.4 24 94 0 144 32 8 23 35 1.85
110524--110574 22 2.3 23 79 3 59 33 3 3 58 1.35
122873--122902 15 2.0 15 93 0 51 43 10 0 46 1.37
124875--124905 15 2.1 15 93 0 53 38 6 6 48 1.55
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
144734--144814 24 3.4 24 94 0 144 35 23 8 32 1.85
147107--147154 21 2.2 22 92 7 89 45 8 33 12 1.72
147114--147168 21 2.5 21 88 8 74 43 10 29 16 1.82
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Tables: 1
The End!