NC_025339.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_025339.1 Nelumbo nucifera chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 163330
Tables: 1
This is table 1 of 1 ( 63 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
281--347 5 13.4 5 100 0 134 80 0 0 19 0.71
1858--1900 13 3.3 13 73 0 50 60 0 0 39 0.97
1883--1948 28 2.5 26 80 7 71 42 0 0 57 0.98
1902--1947 11 4.3 11 75 25 53 36 0 0 63 0.95
1903--1954 13 4.1 13 75 20 56 36 0 0 63 0.95
1900--1969 32 2.2 32 85 7 90 35 1 1 61 1.14
5331--5386 24 2.5 20 76 20 58 53 0 14 32 1.41
6864--6896 17 1.9 17 100 0 66 66 12 9 12 1.44
14824--14859 18 2.0 18 100 0 72 16 27 5 50 1.68
16778--16821 21 2.1 21 95 0 79 31 11 13 43 1.80
16824--16853 14 2.1 14 100 0 60 20 6 6 66 1.38
16839--16877 18 2.2 18 100 0 78 23 5 10 61 1.48
33019--33044 12 2.2 12 100 0 52 57 42 0 0 0.98
34716--34803 22 3.5 25 71 23 69 30 0 1 68 0.97
34719--34811 11 9.1 11 71 16 58 32 0 1 66 0.99
34723--34804 17 5.1 16 77 19 73 31 0 1 67 0.99
34720--34815 47 2.0 47 84 11 126 34 0 1 64 1.01
34752--34816 23 2.8 23 77 13 71 38 0 0 61 0.96
34809--34839 9 3.6 9 91 8 55 67 0 0 32 0.91
34810--34846 17 2.2 17 90 0 56 67 2 2 27 1.17
35617--35641 11 2.3 11 100 0 50 20 8 8 64 1.46
39549--39579 13 2.4 13 100 0 62 12 16 0 70 1.16
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
51219--51266 15 3.2 15 85 5 62 47 4 0 47 1.21
52952--52984 16 2.1 16 94 0 57 30 18 9 42 1.81
55938--55972 11 3.1 11 91 4 52 68 5 0 25 1.11
56199--56232 17 1.9 18 88 5 52 50 5 26 17 1.69
56525--56567 20 2.2 19 95 4 77 51 20 0 27 1.48
57675--57710 18 2.0 18 100 0 72 55 33 5 5 1.46
70047--70075 14 2.1 14 100 0 58 51 0 20 27 1.47
70052--70093 21 2.0 21 86 9 59 52 0 21 26 1.47
72021--72054 17 2.0 17 100 0 68 35 17 17 29 1.93
72148--72179 10 3.1 10 91 8 55 62 18 9 9 1.52
74588--74649 5 12.4 5 75 24 60 40 0 0 59 0.97
74588--74649 9 6.8 9 80 19 67 40 0 0 59 0.97
74585--74649 25 2.6 24 83 13 87 38 0 0 61 0.96
74719--74748 13 2.2 14 94 5 53 0 3 6 90 0.56
75107--75161 17 3.2 17 97 0 101 52 5 9 32 1.56
75364--75490 35 3.5 38 78 14 119 55 0 2 42 1.13
75376--75489 15 7.8 15 73 15 96 55 0 1 42 1.10
75372--75459 42 2.1 41 87 10 126 54 0 0 45 0.99
75440--75502 31 2.0 31 100 0 126 58 0 6 34 1.23
75585--75625 21 2.0 21 95 0 73 29 26 9 34 1.88
76710--76749 15 2.7 15 88 7 55 72 5 2 20 1.15
89829--89854 13 2.0 13 100 0 52 23 15 7 53 1.67
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
90312--90336 6 4.2 6 100 0 50 48 0 16 36 1.46
93236--93266 15 2.1 15 100 0 62 32 19 16 32 1.94
96674--96762 21 4.1 21 85 5 108 12 23 11 52 1.71
99131--99233 18 5.7 18 97 0 188 33 6 26 33 1.83
99131--99225 9 10.6 9 76 0 91 34 6 26 32 1.82
115450--115520 37 1.9 37 97 0 133 39 23 9 26 1.86
122269--122321 24 2.2 24 100 0 106 26 9 15 49 1.74
122280--122331 24 2.2 24 82 0 59 32 13 19 34 1.90
126564--126605 18 2.3 18 88 12 68 38 0 0 61 0.96
126571--126622 22 2.3 23 83 9 63 34 3 0 61 1.14
127882--127912 15 2.1 15 100 0 62 38 12 25 22 1.90
127918--127978 18 3.4 18 84 13 81 49 0 0 50 1.00
136255--136308 27 2.0 27 100 0 108 33 14 11 40 1.82
139721--139791 37 1.9 37 97 0 133 26 9 23 39 1.86
156025--156109 9 9.4 9 78 0 98 34 27 4 34 1.78
156008--156110 18 5.7 18 97 0 188 33 26 6 33 1.83
156006--156120 54 2.1 54 87 9 180 33 26 6 34 1.81
158479--158567 21 4.1 21 85 5 108 52 11 23 12 1.71
161975--162005 15 2.1 15 100 0 62 32 16 19 32 1.94
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Tables: 1
The End!