NC_025910.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_025910.1 Artemisia montana chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151130
Tables: 1
This is table 1 of 1 ( 25 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2044--2082 19 2.1 19 100 0 78 30 10 0 58 1.31
5026--5073 15 3.3 15 91 2 80 54 10 10 25 1.66
9476--9500 13 1.9 13 100 0 50 32 32 20 16 1.94
25069--25093 12 2.1 12 100 0 50 60 8 8 24 1.52
30112--30154 21 2.0 22 90 4 70 48 25 6 18 1.73
45831--45864 17 2.0 17 100 0 68 70 0 17 11 1.16
47654--47688 15 2.4 14 90 9 52 60 20 0 20 1.37
51720--51754 15 2.3 15 90 0 52 34 14 14 37 1.86
56202--56251 24 2.1 24 96 0 91 36 14 18 32 1.90
65332--65367 17 2.1 17 100 0 72 58 5 19 16 1.58
66778--66818 21 2.0 21 95 0 73 31 24 9 34 1.88
76468--76495 14 2.0 14 100 0 56 42 7 7 42 1.59
80455--80494 19 2.1 19 95 0 71 22 5 7 65 1.38
82599--82628 14 2.1 15 93 6 53 33 0 0 66 0.92
90092--90166 18 4.4 17 88 8 73 29 8 25 37 1.84
90103--90166 9 7.1 9 74 0 65 29 7 26 35 1.85
90102--90179 18 4.3 18 96 0 138 29 10 25 34 1.89
97758--97782 10 2.5 10 100 0 50 40 8 0 52 1.31
105769--105830 32 1.9 32 96 0 115 41 20 8 29 1.81
118316--118358 21 2.0 21 100 0 86 58 4 0 37 1.19
128174--128235 32 1.9 32 96 0 115 29 8 20 41 1.81
136222--136246 10 2.5 10 100 0 50 52 0 8 40 1.31
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
143825--143902 18 4.3 18 96 0 138 34 25 10 29 1.89
143825--143902 9 8.7 9 71 0 66 34 25 10 29 1.89
143874--143912 18 2.4 16 87 12 53 41 23 5 30 1.76
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Tables: 1
The End!