NC_026680.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_026680.1 Indigofera tinctoria chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158367
Tables: 1
This is table 1 of 1 ( 117 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2--51 16 3.2 16 80 5 59 42 0 6 52 1.26
26--91 24 2.8 24 82 13 75 50 0 1 48 1.10
26--74 8 6.4 8 77 17 50 51 0 0 48 1.00
3674--3708 17 2.1 17 100 0 70 34 0 5 60 1.21
4409--4433 13 1.9 13 100 0 50 76 16 0 8 1.02
4610--4650 21 2.0 21 100 0 82 19 14 12 53 1.72
4926--4976 20 2.5 20 84 6 68 33 3 1 60 1.26
4958--5019 3 21.3 3 75 18 51 32 0 0 67 0.91
4925--5013 19 4.6 19 78 15 76 31 2 1 65 1.12
4966--5026 22 2.9 21 90 4 95 29 0 1 68 0.99
4947--5019 22 3.5 21 83 10 87 31 1 0 67 1.00
5466--5504 15 2.7 14 88 7 60 20 12 5 61 1.50
5474--5504 15 2.1 15 100 0 62 19 12 6 61 1.53
5542--5576 18 1.9 18 88 0 52 57 11 0 31 1.34
7780--7811 16 2.0 16 100 0 64 18 6 0 75 1.01
9826--9866 17 2.4 18 84 12 59 80 0 9 9 0.91
10921--10957 13 2.7 14 87 8 58 37 2 5 54 1.38
11106--11148 21 2.1 20 86 4 59 32 6 2 58 1.38
12341--12376 18 2.0 18 100 0 72 38 16 5 38 1.72
13543--13603 25 2.5 24 84 10 61 29 14 0 55 1.40
15255--15303 11 4.8 11 73 19 52 61 4 0 34 1.15
15260--15305 18 2.5 19 89 10 78 63 4 0 32 1.14
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
15297--15382 39 2.1 42 81 14 101 73 0 4 22 1.02
15469--15498 15 2.0 15 100 0 60 46 0 6 46 1.29
15834--15871 18 2.1 18 95 0 67 34 10 15 39 1.82
18654--18686 17 1.9 17 93 0 57 48 3 12 36 1.56
19156--19212 17 3.2 17 79 18 62 33 1 0 64 1.04
19159--19226 14 4.6 14 73 20 50 32 2 0 64 1.08
19248--19278 15 2.1 15 100 0 62 32 12 0 54 1.38
19607--19638 16 2.0 16 100 0 64 31 25 6 37 1.81
19981--20026 23 2.0 23 100 0 92 56 4 13 26 1.55
25411--25440 13 2.2 14 94 5 53 76 6 0 16 0.99
25716--25793 17 4.4 17 81 12 102 24 16 0 58 1.38
25840--25869 12 2.5 12 94 0 51 40 0 10 50 1.36
25976--26007 16 2.0 16 100 0 64 50 18 0 31 1.48
30773--30808 18 2.0 18 100 0 72 33 11 16 38 1.84
32364--32398 11 3.1 11 88 8 52 48 8 2 40 1.49
33936--33975 20 2.0 20 100 0 80 40 5 5 50 1.46
34177--34210 17 2.0 17 100 0 68 41 0 11 47 1.40
34602--34626 13 1.9 13 100 0 50 16 28 0 56 1.41
48109--48146 18 2.1 19 90 5 60 47 15 0 36 1.46
48113--48143 12 2.5 13 94 5 55 48 16 0 35 1.46
49496--49545 25 2.0 24 84 3 64 38 2 18 42 1.61
51001--51090 14 6.0 15 72 20 73 48 0 1 50 1.08
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
50995--51066 25 3.0 25 77 16 73 54 0 1 44 1.08
51001--51065 21 3.2 21 83 14 75 53 0 0 46 1.00
51001--51072 34 2.1 34 87 12 103 51 0 0 48 1.00
51106--51132 14 1.9 14 100 0 54 44 0 3 51 1.19
51243--51276 12 2.9 12 86 4 52 76 5 2 14 1.09
54334--54380 23 2.0 23 92 8 78 55 4 4 36 1.39
54563--54606 21 2.1 21 82 0 52 72 2 4 20 1.13
57343--57384 13 3.2 13 86 6 59 35 0 7 57 1.26
57436--57585 51 2.9 51 72 16 130 60 2 1 36 1.16
57680--57743 3 22.7 3 72 12 55 32 0 0 67 0.91
57676--57738 25 2.4 28 84 15 105 31 0 0 68 0.90
57683--57743 25 2.4 25 97 2 113 32 0 0 67 0.91
57694--57746 12 4.3 12 86 13 81 30 0 0 69 0.88
58410--58454 22 2.0 22 95 0 81 55 11 0 33 1.35
60095--60122 14 2.0 14 100 0 56 28 7 0 64 1.20
60138--60169 16 2.0 16 100 0 64 25 6 6 62 1.42
60212--60247 10 3.7 10 85 7 56 44 13 11 30 1.79
60211--60248 19 2.0 19 100 0 76 42 15 10 31 1.81
60233--60262 14 2.2 14 94 5 53 46 3 13 36 1.60
62255--62295 12 3.5 12 96 3 75 41 0 21 36 1.54
63783--63828 23 2.0 23 100 0 92 39 8 13 39 1.75
66575--66606 16 2.0 16 93 0 55 43 12 3 40 1.58
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
70133--70167 18 1.9 18 100 0 70 62 5 8 22 1.45
70328--70379 26 2.0 26 88 7 79 53 1 1 42 1.23
70296--70379 34 2.5 32 75 21 84 54 2 2 40 1.26
70476--70509 16 2.1 16 100 0 68 55 0 5 38 1.24
71158--71182 12 2.1 12 100 0 50 40 8 0 52 1.31
71726--71764 14 2.6 15 84 11 53 56 5 0 38 1.22
71888--71926 21 1.9 21 89 5 62 30 23 10 35 1.88
73828--73869 14 3.0 14 86 6 50 61 0 19 19 1.34
75273--75306 17 2.1 16 94 5 59 32 11 0 55 1.36
83579--83612 14 2.3 15 95 5 61 23 11 0 64 1.26
83711--83736 13 2.0 13 100 0 52 30 0 15 53 1.42
86255--86301 21 2.3 20 92 3 76 48 4 8 38 1.53
88267--88296 15 2.0 15 93 0 51 53 23 3 20 1.60
93535--93602 21 3.2 21 82 0 82 11 22 7 58 1.57
95953--96024 9 8.0 9 87 0 108 33 8 30 27 1.86
95946--96024 27 2.9 27 100 0 158 32 7 29 30 1.85
102513--102570 19 3.1 19 100 0 116 32 15 15 36 1.89
103326--103377 16 2.9 18 80 16 63 9 7 0 82 0.84
103323--103382 15 3.9 15 78 4 57 10 6 0 83 0.81
114220--114277 12 4.9 12 75 14 50 70 3 1 24 1.12
116606--116642 12 3.1 12 100 0 74 16 10 8 64 1.47
116753--116815 29 2.2 29 91 5 101 57 3 0 39 1.15
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
116753--116823 29 2.4 29 86 4 72 56 4 0 39 1.19
117411--117435 13 1.9 13 100 0 50 48 4 0 48 1.20
117440--117470 14 2.2 14 100 0 62 45 6 0 48 1.28
117434--117480 14 2.9 16 78 18 53 48 4 2 44 1.34
117928--117968 14 3.1 14 93 6 68 51 0 0 48 1.00
117907--117962 27 2.0 26 83 10 67 46 0 0 53 1.00
122900--122943 9 4.4 11 85 11 51 43 0 0 56 0.99
122913--122941 9 3.2 9 100 0 58 44 0 0 55 0.99
122910--122952 18 2.4 17 77 11 50 46 0 2 51 1.13
123047--123128 23 3.7 22 87 4 103 26 6 1 65 1.23
123143--123173 14 2.2 14 100 0 62 22 6 6 64 1.40
123154--123200 19 2.5 19 79 6 60 25 6 6 61 1.44
123154--123213 24 2.5 24 74 15 61 25 6 5 63 1.39
123207--123232 13 2.0 13 100 0 52 7 7 0 84 0.77
123234--123279 20 2.3 20 96 0 83 32 4 13 50 1.61
125410--125470 21 3.1 21 90 9 94 45 11 4 37 1.62
125417--125474 17 3.2 17 90 9 80 48 8 5 37 1.56
125464--125522 29 2.0 29 96 0 109 50 3 8 37 1.49
130855--130879 13 1.9 13 100 0 50 4 0 0 96 0.24
131234--131297 29 2.3 29 78 5 78 3 23 4 68 1.23
143838--143882 15 3.3 14 82 14 58 86 0 4 8 0.69
143839--143897 16 3.6 16 74 14 57 83 0 6 10 0.82
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
143838--143897 15 3.9 14 75 20 50 83 0 6 10 0.81
143838--143875 20 1.9 20 88 0 58 86 0 2 10 0.66
144650--144707 19 3.1 19 100 0 116 36 15 15 32 1.89
151196--151267 9 8.0 9 87 0 108 27 30 8 33 1.86
151196--151274 27 2.9 27 100 0 158 30 29 7 32 1.85
153619--153687 21 3.3 21 83 2 86 57 7 23 11 1.58
153651--153707 24 2.5 22 83 8 62 56 12 17 14 1.68
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Tables: 1
The End!