NC_026839.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_026839.1 Lonicera japonica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155078
Tables: 1
This is table 1 of 1 ( 72 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
29421--29450 15 2.0 15 93 0 51 23 26 3 46 1.68
33138--33190 7 7.6 7 76 0 52 73 0 3 22 0.99
33132--33190 21 3.1 21 68 31 69 71 0 5 23 1.06
33145--33183 14 2.8 14 96 0 69 71 0 5 23 1.05
44290--44331 21 2.0 21 100 0 84 42 14 0 42 1.45
48331--48370 13 2.9 14 88 7 64 32 17 7 42 1.77
59574--59681 45 2.4 45 100 0 216 28 25 25 20 1.99
59939--60053 12 10.1 12 74 11 89 38 1 50 9 1.45
59957--60001 18 2.5 18 96 0 81 35 0 53 11 1.37
59936--59988 6 8.8 6 74 0 52 32 0 54 13 1.39
59936--59988 24 2.2 24 100 0 106 32 0 54 13 1.39
59936--60057 42 2.8 42 86 7 145 38 2 48 10 1.51
59983--60057 24 3.1 24 100 0 150 42 4 44 9 1.55
60079--60121 21 2.0 21 95 0 77 32 20 6 39 1.80
60417--60503 33 2.6 33 85 3 113 20 21 34 22 1.97
60487--60600 45 2.5 45 100 0 228 21 20 40 18 1.92
60517--60627 27 4.4 27 76 19 141 18 22 40 18 1.91
60618--60661 18 2.4 18 100 0 88 34 11 43 11 1.77
60671--60821 27 5.6 27 90 3 232 26 21 26 25 2.00
60658--60823 54 3.1 54 92 1 271 25 22 27 24 2.00
60671--60821 81 1.9 81 94 2 268 26 21 26 25 2.00
60956--61049 33 2.8 33 96 0 170 21 20 37 21 1.95
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
62785--62827 21 2.0 21 95 0 77 27 6 18 46 1.75
71120--71173 20 2.9 20 71 18 62 46 9 12 31 1.74
71123--71180 18 3.2 18 70 18 57 41 10 12 36 1.76
71748--71851 21 5.0 21 97 0 181 28 32 16 22 1.95
83369--83395 12 2.2 12 100 0 54 22 18 7 51 1.70
83928--83978 17 3.0 17 97 0 93 11 21 5 60 1.52
84504--84542 18 2.2 18 86 4 53 41 7 10 41 1.68
85971--86022 24 2.2 24 85 0 68 23 15 7 53 1.67
86818--86850 16 2.2 15 89 10 50 36 6 0 57 1.23
91356--91458 24 4.4 24 89 3 131 13 24 13 48 1.78
92994--93042 24 2.0 24 84 0 62 32 22 14 30 1.93
93309--93338 15 2.0 15 100 0 60 60 0 26 13 1.34
93340--93406 18 3.7 18 84 7 100 14 4 58 22 1.55
93340--93421 36 2.3 36 97 0 155 15 4 58 20 1.56
93340--93417 18 4.3 18 82 9 97 16 5 57 20 1.58
94180--94247 15 4.5 15 81 7 75 35 4 29 30 1.77
94176--94260 30 2.8 30 80 7 100 34 4 29 31 1.78
95557--95685 12 10.0 12 69 17 55 36 6 33 23 1.82
95581--95628 24 2.0 24 84 8 62 35 2 39 22 1.66
95657--95715 12 4.9 12 80 0 64 49 0 38 11 1.40
95564--95729 78 2.1 78 83 2 199 39 6 33 19 1.78
99970--100011 21 2.0 21 95 0 75 19 19 21 40 1.92
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
103347--103390 22 2.0 22 100 0 88 27 9 40 22 1.84
111732--111774 22 2.0 22 95 4 79 55 9 4 30 1.52
111784--111829 23 2.0 24 86 4 67 60 6 6 26 1.46
111790--111825 18 2.0 18 100 0 72 61 5 5 27 1.41
112130--112175 24 1.9 24 95 0 83 50 21 6 21 1.71
115448--115487 22 2.0 20 85 14 55 32 15 5 47 1.66
127934--127980 24 2.0 24 95 0 85 12 17 12 57 1.65
128320--128345 12 2.2 12 100 0 52 7 38 0 53 1.30
129488--129548 30 2.0 30 93 0 104 31 16 16 36 1.91
131246--131271 12 2.2 12 100 0 52 15 15 0 69 1.20
131269--131303 17 2.1 17 88 0 52 37 2 2 57 1.29
131762--131807 24 1.9 24 95 0 83 21 6 21 50 1.71
132112--132147 18 2.0 18 100 0 72 27 5 5 61 1.41
132108--132153 23 2.0 24 86 4 67 26 6 6 60 1.46
132163--132205 22 2.0 22 95 4 79 30 4 9 55 1.52
140547--140590 22 2.0 22 100 0 88 22 40 9 27 1.84
143926--143967 21 2.0 21 95 0 75 40 21 19 19 1.92
148222--148280 12 4.9 12 80 0 64 11 38 0 49 1.40
148222--148280 24 2.5 24 86 5 84 11 38 0 49 1.40
148223--148379 24 6.2 24 71 14 66 20 34 5 39 1.76
148320--148356 12 3.1 12 96 0 65 21 43 0 35 1.53
149690--149757 15 4.5 15 86 0 82 30 29 4 35 1.77
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
149677--149761 30 2.8 30 80 7 100 31 29 4 34 1.78
150531--150597 18 3.7 18 84 7 100 22 58 4 14 1.55
150516--150597 36 2.3 36 97 0 155 20 58 4 15 1.56
150599--150628 15 2.0 15 100 0 60 13 26 0 60 1.34
150895--150943 24 2.0 24 84 0 62 30 14 22 32 1.93
152451--152581 24 5.7 24 82 7 139 50 12 24 12 1.75
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Tables: 1
The End!