NC_027152.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_027152.1 Lens culinaris cultivar Northfield chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 122967
Tables: 1
This is table 1 of 1 ( 36 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
22894--22950 29 2.0 29 92 0 96 49 10 19 21 1.78
23493--23546 25 2.2 25 100 0 108 37 7 11 44 1.68
23882--23933 27 1.9 27 92 0 86 38 9 1 50 1.46
29007--29038 13 2.5 13 100 0 64 40 9 0 50 1.35
31872--31914 22 2.0 22 81 9 52 20 4 4 69 1.25
32479--32507 13 2.1 14 93 6 51 41 10 0 48 1.37
47586--47630 16 2.8 16 82 3 54 22 13 4 60 1.51
47624--47655 16 2.0 16 93 0 55 62 0 15 21 1.32
51536--51589 22 2.6 21 83 11 67 46 9 9 35 1.68
54483--54850 172 2.1 172 83 4 456 28 20 24 26 1.99
54889--55096 67 3.1 67 94 0 353 45 10 6 37 1.64
55067--55144 23 3.4 23 94 0 138 51 7 8 32 1.62
55145--55236 19 4.8 19 90 0 130 44 8 13 33 1.74
55233--55281 11 4.9 10 83 14 57 30 10 2 57 1.43
55233--55270 9 4.0 9 87 12 58 34 10 0 55 1.34
55231--55282 20 2.6 20 93 0 86 32 9 1 55 1.43
55401--55432 15 2.1 15 94 0 55 34 0 3 62 1.11
55568--55746 54 3.4 54 74 2 130 34 11 29 25 1.91
56207--56243 9 4.1 9 100 0 74 45 10 32 10 1.74
56238--56307 33 2.1 33 97 0 131 35 12 15 35 1.86
56536--56579 15 2.9 15 89 0 70 34 13 34 18 1.90
56607--56728 15 7.7 15 79 10 127 33 13 36 17 1.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
56653--56729 36 2.1 36 85 4 102 33 11 38 15 1.84
66377--66408 16 1.9 17 93 6 57 43 3 9 43 1.52
84157--84341 80 2.3 80 97 0 352 47 10 4 37 1.59
84320--84358 17 2.3 17 95 0 69 66 5 5 23 1.32
89920--89948 14 2.1 14 100 0 58 13 13 6 65 1.45
102937--102981 21 2.1 21 88 8 65 48 26 0 24 1.51
104188--104216 15 1.9 15 100 0 58 24 13 20 41 1.89
104702--104727 12 2.2 12 100 0 52 61 15 15 7 1.55
105060--105101 18 2.3 18 87 0 57 40 9 16 33 1.81
107019--107085 27 2.5 27 90 0 107 71 7 14 5 1.28
107583--107672 45 2.0 45 100 0 180 37 15 20 26 1.92
109202--109242 22 1.9 21 90 5 64 51 4 0 43 1.23
109460--109502 19 2.3 19 91 0 68 46 4 6 41 1.51
118975--119019 20 2.2 20 84 11 56 64 4 2 28 1.25
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Tables: 1
The End!