NC_027456.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_027456.1 Panax quinquefolius chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156088
Tables: 1
This is table 1 of 1 ( 22 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4365--4396 16 2.0 16 100 0 64 68 0 0 31 0.90
6557--6595 18 2.2 17 90 4 60 64 17 2 15 1.41
7010--7042 16 2.1 16 94 0 57 21 6 18 54 1.64
8935--8972 19 2.0 19 85 10 51 39 0 26 34 1.57
9610--9641 15 2.1 15 100 0 64 81 0 12 6 0.87
17733--17780 23 2.1 23 100 0 96 29 14 4 52 1.60
32843--32895 28 1.9 28 84 3 72 66 0 3 30 1.10
33285--33322 19 2.0 19 100 0 76 36 10 5 47 1.61
33294--33345 16 3.3 16 86 7 72 40 5 5 48 1.51
48826--48865 13 3.1 13 100 0 80 55 0 15 30 1.41
48811--48856 22 2.0 23 87 4 67 54 2 13 30 1.50
61322--61353 16 2.0 16 100 0 64 50 0 0 50 1.00
69183--69215 17 1.9 17 88 11 50 0 33 0 66 0.92
69930--69970 21 2.0 21 95 0 73 29 26 9 34 1.88
73975--74007 15 2.3 15 89 5 50 24 12 6 57 1.57
76163--76200 19 2.0 19 100 0 76 52 15 10 21 1.72
92768--92845 18 4.3 18 98 0 147 28 11 28 32 1.92
111271--111390 57 2.1 57 100 0 240 50 12 30 6 1.66
128132--128185 24 2.3 24 81 12 67 18 3 14 62 1.46
130794--130913 57 2.1 57 100 0 240 6 30 12 50 1.66
141430--141475 23 2.0 23 82 0 56 58 8 6 26 1.52
149339--149416 18 4.3 18 98 0 147 32 28 11 28 1.92
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Tables: 1
The End!