NC_027681.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_027681.1 Pinellia ternata chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 164013 Tables: 1 2 This is table 1 of 2 ( 127 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ----- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 112--140 15 2.0 15 93 6 51 27 6 0 65 1.18 128--182 21 2.9 18 80 17 67 43 9 0 47 1.35 140--187 21 2.3 21 96 0 87 47 8 0 43 1.33 186--384 15 13.1 15 68 20 55 36 5 1 57 1.30 192--299 42 2.6 42 98 0 207 35 8 1 54 1.41 180--415 13 17.5 13 69 18 103 37 4 1 56 1.27 322--418 22 4.3 23 71 15 71 38 0 1 60 1.03 372--415 11 3.8 11 82 8 52 40 0 0 59 0.98 379--420 16 2.6 17 77 11 52 40 0 0 59 0.97 1915--1954 15 2.7 15 100 0 80 35 10 7 47 1.65 4664--4725 25 2.6 25 94 5 110 59 6 3 30 1.38 5750--5777 14 2.0 14 100 0 56 50 7 7 35 1.57 9506--9549 21 2.0 22 95 4 81 52 2 0 45 1.13 9640--9769 5 25.2 5 74 16 81 55 1 1 41 1.18 9640--9757 18 6.2 20 81 10 99 56 1 1 39 1.19 9659--9702 19 2.6 16 77 19 52 56 2 0 40 1.11 9672--9881 20 9.7 23 72 17 123 54 0 0 43 1.10 9678--9943 7 37.7 7 71 16 131 51 0 0 47 1.09 9645--9884 34 7.0 35 72 16 125 54 0 1 43 1.14 9743--9792 5 9.2 5 81 14 55 42 0 0 58 0.98 9875--10016 59 2.3 61 76 19 145 38 0 0 60 1.07 9875--9990 39 3.1 39 84 10 136 37 0 0 62 0.95 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 9880--10035 30 5.5 29 75 18 93 39 0 1 58 1.11 9881--9999 20 6.3 20 77 19 84 37 0 0 61 1.02 9952--9999 21 2.3 21 89 7 71 37 0 2 60 1.09 9907--10035 51 2.5 53 82 10 140 38 0 1 58 1.13 10370--10415 1 46.0 1 100 0 92 0 0 0 100 0.00 10474--10507 1 34.0 1 100 0 68 0 0 0 100 0.00 14904--14942 14 2.7 15 84 8 62 79 0 0 20 0.73 14901--14942 13 3.4 12 81 12 50 80 0 0 19 0.70 15257--15321 25 2.6 25 85 9 80 27 0 4 67 1.10 15256--15302 14 3.7 12 81 18 51 31 0 2 65 1.04 15280--15327 20 2.4 19 80 16 53 27 2 4 66 1.21 16145--16224 40 2.0 40 92 0 133 47 13 8 30 1.73 17623--17654 1 32.0 1 100 0 64 0 0 0 100 0.00 29937--30011 2 37.5 2 100 0 150 0 50 0 49 1.00 30012--30053 2 21.0 2 100 0 84 50 0 0 50 1.00 32268--32298 10 3.0 10 90 9 53 41 0 0 58 0.98 32268--32299 11 3.0 11 95 4 57 43 0 0 56 0.99 32527--32551 10 2.5 10 100 0 50 72 0 0 28 0.86 33015--33194 91 2.0 91 98 0 351 35 18 15 31 1.92 34238--34279 20 2.2 20 87 8 61 42 11 0 45 1.41 34270--34309 14 3.0 14 85 7 57 52 0 0 47 1.00 34238--34295 18 3.2 19 80 9 59 43 8 0 48 1.34 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 38623--38653 14 2.2 14 94 0 53 22 16 12 48 1.80 39159--39188 12 2.6 11 90 10 51 30 6 0 63 1.20 39158--39201 14 3.2 14 81 12 56 27 6 0 65 1.17 39158--39211 25 2.1 27 83 13 69 27 7 0 64 1.20 46284--46317 15 2.3 15 90 5 52 14 8 5 70 1.31 49613--49646 14 2.4 14 95 0 59 52 0 8 38 1.33 50185--50227 2 21.5 2 100 0 86 48 0 0 51 1.00 50243--50323 11 7.3 11 73 23 64 25 1 0 72 0.92 50245--50321 38 2.0 38 85 9 104 27 1 0 71 0.94 50249--50355 9 10.8 10 72 23 59 28 2 0 68 1.10 50350--50388 17 2.3 17 100 0 78 30 10 0 58 1.31 50243--50359 4 28.8 4 69 19 73 27 2 0 69 1.07 50266--50388 42 2.9 42 75 11 117 28 5 0 65 1.21 50330--50372 13 3.4 12 80 6 50 30 6 0 62 1.21 52391--52425 18 1.9 18 88 11 54 45 2 0 51 1.16 59489--59529 20 2.0 20 100 0 82 39 0 14 46 1.45 63700--63750 4 12.8 4 85 0 57 58 0 1 39 1.09 63700--63796 8 12.1 8 76 12 83 59 0 1 39 1.04 63700--63798 12 7.9 12 77 15 85 60 0 1 38 1.04 63748--63795 10 4.6 10 83 16 62 60 0 0 39 0.97 63715--63798 23 3.5 23 85 10 107 61 0 1 36 1.04 63699--63795 40 2.7 35 80 17 103 59 0 1 39 1.04 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 63701--63792 23 4.3 21 73 17 82 58 0 1 40 1.05 66061--66099 19 2.1 19 100 0 78 23 20 0 56 1.42 70575--70699 60 2.1 61 93 4 218 24 16 15 44 1.86 70764--70795 2 16.0 2 100 0 64 50 0 0 50 1.00 73107--73156 25 2.0 25 100 0 100 56 16 4 24 1.57 73221--73260 21 1.9 21 89 0 62 37 27 7 27 1.84 73696--73725 14 2.1 14 93 0 51 20 3 0 76 0.92 87299--87347 11 3.5 15 73 23 52 32 6 4 57 1.42 87295--87348 26 2.0 27 92 3 92 33 5 3 57 1.40 89415--89448 15 2.4 14 90 5 50 5 0 5 88 0.64 94541--94626 24 3.7 24 81 9 115 15 24 12 47 1.80 94561--94632 21 3.3 21 80 12 83 13 25 11 50 1.75 94541--94632 45 2.1 45 95 2 168 14 23 11 50 1.76 97001--97074 15 4.7 15 72 21 71 33 5 22 37 1.77 97008--97089 24 3.4 24 93 0 137 35 6 23 35 1.80 100186--100298 28 4.0 28 71 17 74 56 1 2 38 1.24 100262--100297 15 2.4 15 95 0 63 50 2 5 41 1.40 103164--103248 44 1.9 44 100 0 170 22 15 14 48 1.80 103312--103421 55 2.0 55 100 0 220 18 21 16 43 1.88 111308--111385 39 2.0 39 100 0 156 17 28 30 23 1.97 115504--115550 12 3.8 12 88 2 67 48 4 0 46 1.21 115664--115733 2 35.5 2 97 2 133 50 0 0 50 1.00 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 115733--115888 2 78.0 2 100 0 312 0 0 50 50 1.00 115888--115954 2 33.5 2 93 0 116 49 0 50 0 1.00 115974--116032 2 29.5 2 92 0 100 45 1 1 50 1.21 116421--116458 2 19.0 2 100 0 76 50 0 0 50 1.00 116472--116905 2 219.5 2 92 4 648 47 1 51 0 1.12 116922--116963 13 3.3 13 90 3 59 71 4 4 19 1.22 124550--124593 22 2.0 22 90 0 70 61 0 6 31 1.22 124620--124658 19 2.1 19 100 0 78 58 5 0 35 1.20 124728--124835 4 26.8 4 73 19 91 28 0 0 70 0.94 124715--124831 23 5.0 24 69 22 79 29 1 0 68 1.00 124746--124847 52 2.0 52 96 0 186 30 1 0 67 1.01 125032--125082 2 25.5 2 100 0 102 49 0 0 50 1.00 125669--125737 13 5.8 13 69 20 53 49 0 0 50 1.00 125735--125759 11 2.3 11 100 0 50 36 8 0 56 1.29 125805--125841 17 2.2 17 95 0 65 45 8 8 37 1.63 126440--126572 1 133.0 1 89 0 203 94 0 0 5 0.30 126597--126895 6 51.5 6 90 6 483 53 0 46 0 1.00 126712--126744 3 11.0 3 100 0 66 66 0 33 0 0.92 131673--131715 19 2.3 19 100 0 86 58 0 4 37 1.19 131777--131811 1 35.0 1 94 0 61 97 2 0 0 0.19 131777--131816 16 2.6 16 92 4 64 92 5 0 2 0.45 131879--131950 2 36.0 2 100 0 144 50 0 0 50 1.00 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 131950--132289 2 174.5 2 93 5 599 50 0 49 0 1.00 132314--132403 3 30.7 3 75 20 84 36 2 0 61 1.09 132314--132401 18 4.7 19 84 13 103 36 2 0 61 1.09 132355--132460 7 15.4 7 74 16 53 50 0 0 49 1.07 135772--135820 13 3.8 12 79 12 53 0 24 4 71 1.03 136610--136645 18 2.0 18 100 0 72 33 11 16 38 1.84 142412--142489 39 2.0 39 100 0 156 23 30 28 17 1.97 150376--150485 55 2.0 55 100 0 220 43 16 21 18 1.88 150549--150633 44 1.9 44 100 0 170 48 14 15 22 1.80 153443--153491 25 2.0 25 88 4 73 22 0 10 67 1.20 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ----- --------- Tables: 1 2