NC_027728.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_027728.1 Rheum palmatum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 161541
Tables: 1
This is table 1 of 1 ( 44 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1647--1671 12 2.1 12 100 0 50 52 16 8 24 1.70
27759--27787 10 2.9 10 100 0 58 31 20 10 37 1.86
32748--32777 15 2.0 15 100 0 60 73 0 13 13 1.10
34419--34460 16 2.8 15 82 7 50 40 11 11 35 1.79
34431--34461 16 1.9 16 93 0 53 38 12 9 38 1.77
44130--44167 20 1.9 19 85 15 51 42 0 0 57 0.98
47130--47155 13 2.0 13 100 0 52 38 7 0 53 1.30
48895--48931 16 2.3 16 95 0 65 35 2 5 56 1.36
48977--49019 18 2.3 19 96 4 79 67 0 4 27 1.10
48991--49045 25 2.2 25 81 12 60 69 0 7 23 1.14
49649--49709 32 1.9 32 100 0 122 52 6 1 39 1.37
49640--49718 13 5.8 13 81 18 90 54 5 1 39 1.30
51618--51652 16 2.2 16 89 0 52 31 0 5 62 1.18
53315--53350 18 2.0 18 88 0 54 44 8 5 41 1.58
66636--66664 13 2.2 13 100 0 58 58 6 6 27 1.50
67409--67446 12 2.9 14 84 15 62 57 0 7 34 1.28
68243--68290 8 5.9 8 79 13 53 29 2 16 52 1.56
68241--68295 24 2.3 24 93 0 92 30 1 16 50 1.55
68324--68353 15 2.0 15 93 0 51 40 10 10 40 1.72
69395--69436 22 1.9 22 90 0 66 23 9 0 66 1.21
69401--69443 22 2.0 22 90 0 68 20 11 0 67 1.22
70015--70092 38 2.0 41 82 14 101 61 2 7 28 1.37
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
73620--73658 17 2.4 16 84 12 53 53 0 10 35 1.35
92280--92322 21 2.0 21 90 0 68 34 16 20 27 1.94
96497--96532 17 2.1 17 100 0 72 30 22 5 41 1.76
109683--109748 32 2.1 32 91 0 105 42 22 7 27 1.80
111357--111414 26 2.3 24 80 16 64 63 0 6 29 1.20
111373--111414 20 2.1 20 86 8 59 66 0 7 26 1.17
111435--111491 26 2.2 26 84 12 73 50 5 10 33 1.59
112231--112294 21 3.0 21 82 8 76 28 12 26 32 1.93
113300--113333 12 2.8 12 95 0 59 41 11 26 20 1.87
120687--121652 486 2.0 486 99 0 1923 34 15 14 36 1.87
125485--125555 37 1.9 37 100 0 142 49 8 11 30 1.68
134727--134760 12 2.8 12 95 0 59 20 26 11 41 1.87
134716--134768 12 4.4 12 82 0 52 22 28 7 41 1.81
135766--135821 21 2.7 21 88 0 76 35 26 10 26 1.89
135775--135829 21 2.6 20 86 11 74 32 27 12 27 1.93
136568--136625 26 2.2 26 82 11 75 34 10 5 50 1.59
136646--136687 20 2.1 20 86 8 59 26 7 0 66 1.17
136655--136690 17 2.1 17 89 0 54 27 5 0 66 1.13
136646--136703 26 2.3 24 80 16 64 29 6 0 63 1.20
138312--138377 32 2.1 32 91 0 105 27 7 22 42 1.80
151528--151563 17 2.1 17 100 0 72 41 5 22 30 1.76
155738--155780 21 2.0 21 90 0 68 27 20 16 34 1.94
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Tables: 1
The End!