NC_027732.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_027732.1 Sinopodophyllum hexandrum voucher SHEX20150512 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157940
Tables: 1
This is table 1 of 1 ( 51 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4308--4629 162 2.0 162 100 0 644 37 15 18 28 1.92
4724--4748 11 2.3 11 100 0 50 84 8 8 0 0.79
5756--5869 54 2.2 53 95 3 203 25 17 9 47 1.78
8807--8886 32 2.6 32 88 5 112 26 12 20 41 1.87
9708--9736 12 2.5 12 94 5 51 24 41 0 34 1.55
10121--10200 38 2.2 38 95 4 146 33 7 7 51 1.58
13887--13914 9 3.1 9 100 0 56 57 21 0 21 1.41
27761--27939 89 2.0 89 100 0 358 36 10 22 30 1.87
30753--30834 41 2.0 40 97 2 155 26 21 19 31 1.97
31303--31522 110 2.0 110 100 0 440 32 12 13 40 1.83
33217--33280 31 2.1 31 100 0 128 40 12 12 34 1.81
33674--33834 80 2.0 80 100 0 322 53 7 9 29 1.61
37036--37155 52 2.3 52 92 2 199 29 20 25 24 1.99
46364--46540 87 2.0 87 100 0 354 27 14 14 43 1.85
52290--52379 42 2.1 42 97 0 171 31 15 17 35 1.92
52595--52630 18 2.0 18 100 0 72 44 11 5 38 1.63
53249--53319 34 2.1 34 100 0 142 22 28 32 16 1.96
53589--53892 152 2.0 152 100 0 608 37 10 19 32 1.86
64792--64866 35 2.1 35 100 0 150 41 5 20 33 1.75
67006--67506 250 2.0 250 100 0 1002 38 13 16 31 1.87
69461--69517 28 2.0 28 100 0 114 50 10 24 14 1.73
70564--70674 54 2.1 54 100 0 222 27 9 10 51 1.69
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
70564--70687 54 2.3 54 94 2 205 29 9 9 51 1.66
77664--77715 25 2.1 25 100 0 104 40 7 15 36 1.76
81567--81612 24 1.9 24 90 0 74 26 34 15 23 1.94
91298--91366 21 3.3 21 89 2 104 10 24 11 53 1.68
93738--93791 18 3.2 18 87 7 78 31 5 24 38 1.78
93758--93798 18 2.3 18 91 0 64 36 7 24 31 1.83
100888--101097 99 2.1 99 98 1 404 24 10 7 58 1.56
101068--101119 22 2.3 23 90 3 79 13 9 1 75 1.14
101064--101122 22 2.9 20 78 14 59 13 10 1 74 1.14
101855--102064 100 2.1 100 100 0 420 21 19 21 37 1.95
115024--115734 355 2.0 355 100 0 1422 35 13 11 39 1.81
116534--116755 110 2.0 110 100 0 444 31 9 22 37 1.85
117052--117128 37 2.1 37 100 0 154 28 24 19 27 1.99
117437--117519 41 2.0 41 100 0 166 49 12 7 31 1.67
122167--122265 49 2.0 49 100 0 198 33 18 10 38 1.84
123735--123982 124 2.0 124 100 0 496 44 8 12 33 1.74
124415--124558 71 2.0 70 98 1 279 45 20 15 18 1.86
126292--126415 61 2.0 62 98 1 241 31 14 15 38 1.87
127981--128006 12 2.2 12 100 0 52 0 15 0 84 0.62
128009--128113 51 2.1 49 96 1 174 13 9 7 69 1.36
128031--128111 27 3.4 22 68 18 63 11 8 7 72 1.27
128019--128103 24 3.2 29 68 22 94 15 10 9 64 1.48
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
128522--128581 27 2.3 27 97 2 113 38 20 11 30 1.88
142337--142546 100 2.1 100 100 0 420 37 21 19 21 1.95
143282--143342 23 2.7 22 84 5 77 77 1 8 13 1.07
143282--143333 22 2.3 23 90 3 79 75 1 9 13 1.14
143304--143513 99 2.1 99 98 1 404 58 7 10 24 1.56
150610--150663 18 3.2 18 87 7 78 38 24 5 31 1.78
153035--153103 21 3.3 21 89 2 104 53 11 24 10 1.68
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Tables: 1
The End!