NC_028009.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_028009.1 Morinda officinalis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153398
Tables: 1
This is table 1 of 1 ( 50 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1695--1719 12 2.1 12 100 0 50 68 0 0 32 0.90
1684--1728 20 2.1 22 88 8 67 68 0 0 31 0.89
5446--5473 13 2.2 13 100 0 56 39 7 14 39 1.73
5576--5624 14 3.7 14 78 15 50 51 16 6 26 1.68
5598--5625 14 2.0 14 100 0 56 50 14 14 21 1.78
6766--6795 15 2.0 15 100 0 60 26 6 13 53 1.64
10049--10091 14 3.0 14 90 6 68 44 11 2 41 1.53
13296--13334 14 2.9 14 88 11 55 12 5 0 82 0.83
13300--13334 18 1.9 18 88 0 52 14 2 0 82 0.77
14744--14768 12 2.1 12 100 0 50 40 16 0 44 1.47
15689--15725 19 1.9 19 94 0 65 43 8 5 43 1.57
16669--16701 17 2.0 16 94 5 57 18 15 0 66 1.25
28995--29037 22 1.9 23 90 4 70 37 4 11 46 1.61
29458--29494 12 3.1 12 100 0 74 32 8 0 59 1.27
29817--29925 46 2.4 46 98 0 209 27 11 9 51 1.69
30321--30346 13 2.0 13 100 0 52 30 15 7 46 1.74
30437--30471 11 3.1 11 91 4 52 60 2 11 25 1.45
30455--30507 16 3.0 18 78 18 58 56 0 5 37 1.23
30454--30499 20 2.3 20 85 7 67 58 0 6 34 1.24
30450--30503 14 4.1 13 80 17 58 57 0 7 35 1.27
31323--31354 15 2.1 15 94 0 55 46 12 3 37 1.57
31785--31828 22 2.0 22 95 0 79 27 18 15 38 1.91
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
32148--32178 13 2.4 13 94 0 53 51 0 6 41 1.27
32431--32466 18 2.0 18 94 0 63 52 11 0 36 1.37
40771--40799 15 1.9 15 100 0 58 17 27 34 20 1.95
42762--42789 14 2.0 14 100 0 56 57 7 0 35 1.26
42808--42846 14 2.7 14 84 4 51 56 2 0 41 1.13
42858--42909 11 4.9 11 76 9 54 57 1 0 40 1.10
42877--42918 20 2.2 18 87 8 57 71 0 0 28 0.86
51424--51494 3 23.3 3 71 23 51 36 2 0 60 1.11
51425--51493 36 1.9 36 82 11 88 37 2 0 59 1.12
58834--58873 20 2.0 20 100 0 80 20 15 0 65 1.28
63398--63423 12 2.2 12 100 0 52 50 0 7 42 1.31
66637--66664 14 2.0 14 100 0 56 42 14 0 42 1.45
67718--67758 21 2.0 21 95 0 73 29 21 12 36 1.90
73746--73803 17 3.5 16 79 13 64 27 5 0 67 1.12
76838--76879 14 3.0 14 92 0 66 23 0 2 73 0.94
82370--82397 14 2.0 14 100 0 56 21 7 14 57 1.61
88749--88803 24 2.5 22 85 8 67 14 23 12 49 1.78
88767--88837 21 3.5 20 77 7 79 11 21 8 59 1.58
91193--91232 18 2.2 18 95 0 71 32 7 25 35 1.84
99046--99084 12 3.2 12 78 7 51 20 12 2 64 1.40
112719--112753 16 2.2 16 100 0 70 65 11 5 17 1.43
126041--126086 15 3.1 14 84 6 56 0 23 4 71 1.03
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
126020--126076 28 2.1 27 83 3 69 1 21 5 71 1.14
126028--126078 13 3.8 13 79 10 50 1 21 3 72 1.11
138035--138073 12 3.2 12 78 7 51 64 2 12 20 1.40
145887--145926 18 2.2 18 95 0 71 35 25 7 32 1.84
148282--148352 21 3.4 21 79 9 83 59 8 21 11 1.58
148281--148370 21 4.0 22 75 10 76 55 10 22 12 1.66
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Tables: 1
The End!