NC_028023.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_028023.1 Larrea tridentata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 136194
Tables: 1
This is table 1 of 1 ( 44 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
35--96 11 5.2 12 79 13 65 54 6 3 35 1.42
35--93 24 2.5 23 81 13 66 52 6 3 37 1.45
54--103 22 2.3 22 83 13 59 58 6 2 34 1.34
1719--1752 17 2.0 17 100 0 68 52 5 11 29 1.61
3674--3726 27 2.0 26 89 10 81 35 9 3 50 1.53
4660--4689 15 2.0 15 93 0 51 56 6 6 30 1.51
8822--8853 16 2.0 16 100 0 64 18 18 6 56 1.62
12476--12514 20 2.0 20 100 0 78 25 17 10 46 1.80
14998--15040 22 2.0 22 85 0 59 25 11 6 55 1.60
27979--28042 11 6.2 11 73 12 55 20 7 0 71 1.10
29300--29329 15 2.0 15 100 0 60 46 0 6 46 1.29
34208--34239 16 2.0 16 93 0 55 62 9 3 25 1.40
34565--34595 13 2.3 14 94 5 55 54 6 6 32 1.51
45167--45219 19 2.8 18 75 11 52 58 1 3 35 1.27
45173--45204 13 2.4 13 94 5 55 62 0 6 31 1.20
46514--46539 13 2.0 13 100 0 52 30 15 15 38 1.88
50716--50749 17 2.0 17 94 0 59 29 14 14 41 1.86
52844--52869 13 2.0 13 100 0 52 46 0 0 53 1.00
52845--52893 15 3.3 15 86 8 57 51 6 0 42 1.27
55042--55075 17 2.0 17 88 0 50 32 26 8 32 1.87
55919--55970 18 2.9 18 94 5 88 34 3 25 36 1.74
56018--56135 57 2.1 57 91 3 193 40 15 18 25 1.90
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
58428--58454 13 2.1 13 100 0 54 44 0 7 48 1.31
62334--62364 14 2.2 14 100 0 62 51 0 6 41 1.27
63716--63760 11 4.3 11 81 18 51 64 4 0 31 1.13
63720--63765 19 2.4 19 92 0 74 67 2 0 30 1.03
64360--64417 15 3.8 15 88 2 62 48 6 0 44 1.29
64375--64419 15 3.0 15 93 0 72 44 8 0 46 1.34
65206--65244 21 1.9 21 89 5 62 38 23 5 33 1.77
65694--65726 16 2.0 17 88 5 50 45 15 3 36 1.61
81321--81752 215 2.0 215 100 0 864 21 25 14 38 1.91
83832--83857 13 2.0 13 100 0 52 53 15 15 15 1.73
84758--84792 17 2.1 17 94 5 63 48 0 22 28 1.51
99553--99596 14 3.1 14 83 6 54 40 20 2 36 1.65
100277--100306 15 2.0 15 93 0 51 36 10 6 46 1.64
100317--100358 21 2.0 21 90 0 66 38 7 16 38 1.76
104529--104567 7 5.4 8 80 20 50 30 12 0 56 1.37
104529--104564 14 2.6 14 100 0 72 30 13 0 55 1.39
111192--111223 12 2.7 12 95 0 55 25 0 9 65 1.22
117373--117414 21 2.0 21 90 0 66 38 16 7 38 1.76
117425--117454 15 2.0 15 93 0 51 46 6 10 36 1.64
118135--118178 14 3.1 14 83 6 54 36 2 20 40 1.65
132939--132973 17 2.1 17 94 5 63 28 22 0 48 1.51
133874--133899 13 2.0 13 100 0 52 15 15 15 53 1.73
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Tables: 1
The End!