NC_028027.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_028027.1 Silybum marianum voucher SMAR20150709 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153202
Tables: 1
This is table 1 of 1 ( 28 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
9237--9530 149 2.0 149 100 0 588 33 8 21 37 1.83
9557--9588 15 2.1 15 100 0 64 68 0 18 12 1.20
23107--23174 30 2.3 30 94 2 120 30 14 11 42 1.82
25648--25694 24 2.0 24 83 8 60 46 0 36 17 1.48
29940--30012 18 4.6 18 70 28 74 58 0 8 32 1.27
29941--29996 27 2.1 27 96 0 103 60 0 5 33 1.19
31250--31285 18 2.0 18 94 0 63 41 11 2 44 1.54
42000--42093 46 2.0 46 100 0 188 63 12 0 23 1.28
46129--46159 15 2.1 15 100 0 62 58 0 19 22 1.40
52107--52136 15 2.0 15 93 0 51 36 16 13 33 1.88
54434--54482 24 2.0 25 96 0 75 57 8 10 24 1.59
54891--54922 16 2.0 16 100 0 64 43 25 0 31 1.55
59199--59246 20 2.3 21 92 7 89 45 4 4 45 1.41
63177--63218 21 2.0 21 100 0 84 57 0 9 33 1.31
65761--65785 12 2.1 12 100 0 50 40 8 16 36 1.77
68037--68077 21 2.0 21 95 0 73 31 24 9 34 1.88
90596--90622 9 3.0 9 100 0 54 11 11 44 33 1.75
91373--91453 18 4.5 18 92 0 99 27 11 28 33 1.91
107247--107308 32 1.9 32 93 0 106 41 22 8 27 1.82
110029--110119 45 2.0 45 93 0 155 46 10 13 29 1.77
112841--112882 21 2.0 21 95 0 75 19 0 30 50 1.48
113055--113101 24 2.0 24 100 0 94 46 0 40 12 1.42
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
113087--113208 30 4.0 30 83 6 154 37 1 27 32 1.67
113087--113206 63 2.0 60 85 5 159 36 1 28 33 1.67
130019--130080 32 1.9 32 93 0 106 27 8 22 41 1.82
145874--145942 18 3.8 18 94 0 102 34 27 11 26 1.91
145874--145969 36 2.7 36 78 0 102 33 28 10 28 1.90
146705--146731 9 3.0 9 100 0 54 33 44 11 11 1.75
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Tables: 1
The End!