NC_028032.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_028032.1 Humulus lupulus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153751
Tables: 1
This is table 1 of 1 ( 34 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
55--114 19 3.2 19 100 0 120 60 5 10 25 1.49
5293--5327 12 3.1 12 92 8 56 17 20 0 62 1.32
7340--7373 16 2.0 18 88 11 54 32 26 5 35 1.81
8880--8914 11 3.2 11 87 0 52 80 0 11 8 0.92
10086--10110 11 2.3 11 100 0 50 56 0 8 36 1.29
13391--13422 16 2.0 16 93 0 55 46 0 12 40 1.42
14120--14163 22 2.0 22 100 0 88 36 27 13 22 1.92
16625--16655 15 2.1 15 100 0 62 32 32 22 12 1.92
17442--17466 12 2.1 12 100 0 50 48 0 8 44 1.32
29924--29955 15 2.1 15 100 0 64 53 0 0 46 1.00
36102--36141 19 2.1 19 100 0 80 52 5 5 37 1.45
36752--36784 16 2.1 16 100 0 66 42 6 0 51 1.26
36780--36811 15 2.1 15 94 0 55 53 0 9 37 1.34
43770--43802 17 1.9 17 88 11 50 3 21 6 69 1.24
44748--44773 13 2.0 13 100 0 52 69 7 0 23 1.14
47314--47374 31 1.9 31 83 6 77 47 4 4 42 1.46
52409--52433 12 2.1 12 100 0 50 24 0 24 52 1.48
59374--59400 13 2.1 13 100 0 54 29 0 0 70 0.88
67709--67763 23 2.3 24 93 3 94 50 3 3 41 1.37
67709--67748 13 3.3 13 73 20 50 52 5 0 42 1.23
68181--68227 23 2.0 23 91 0 76 51 12 0 36 1.40
68359--68398 21 2.0 21 95 5 73 32 20 10 37 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
75517--75552 18 2.0 18 100 0 72 38 11 5 44 1.63
89268--89342 21 3.2 24 73 19 77 10 24 8 57 1.59
91701--91739 18 2.2 18 100 0 78 33 5 25 35 1.78
98891--98927 12 2.8 13 88 12 58 5 10 0 83 0.79
99422--99469 14 2.9 18 76 23 68 27 10 4 58 1.49
113040--113069 15 2.0 15 100 0 60 60 0 13 26 1.34
116937--116964 14 2.0 14 100 0 56 50 7 7 35 1.57
138392--138439 14 2.9 18 76 23 68 58 4 10 27 1.49
138934--138970 12 2.9 13 88 8 58 83 0 10 5 0.79
146122--146160 18 2.2 18 100 0 78 35 25 5 33 1.78
148519--148593 21 3.2 24 73 19 77 57 8 24 10 1.59
153669--153698 11 2.7 11 89 0 51 43 0 10 46 1.37
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Tables: 1
The End!