NC_028070.2.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_028070.2 Solanum nigrum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155432
Tables: 1
This is table 1 of 1 ( 26 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
225--251 13 2.1 13 100 0 54 55 0 22 22 1.44
5051--5076 13 2.0 13 100 0 52 23 15 0 61 1.33
16766--16798 17 2.0 16 94 5 57 18 15 0 66 1.25
63868--63900 14 2.4 14 95 5 59 21 9 21 48 1.77
67013--67046 17 2.0 17 100 0 68 64 0 11 23 1.26
69885--69925 21 2.0 21 90 0 64 29 24 9 36 1.87
70220--70251 16 2.0 16 100 0 64 31 6 25 37 1.81
73594--73622 14 2.1 14 100 0 58 37 6 6 48 1.57
88021--88068 20 2.4 20 100 0 96 41 10 22 25 1.85
90642--90731 21 4.1 21 78 9 83 13 21 10 55 1.66
93084--93143 18 3.3 18 88 0 93 31 10 25 33 1.89
100876--100940 21 3.0 21 89 10 89 35 1 12 50 1.49
100897--100943 10 4.5 11 84 10 64 34 0 14 51 1.43
108652--108717 32 2.1 32 94 0 114 42 22 9 25 1.83
113048--113086 20 2.0 20 85 10 53 56 23 0 20 1.42
114908--114942 14 2.5 14 95 0 61 57 5 14 22 1.59
125233--125260 14 2.0 14 100 0 56 35 21 7 35 1.81
128525--128579 28 2.0 28 89 7 85 0 23 5 70 1.07
128520--128577 13 4.3 14 72 20 52 0 22 3 74 0.97
128531--128579 14 3.4 15 75 16 50 0 22 6 71 1.08
128520--128587 28 2.5 27 82 15 79 0 20 5 73 1.04
132526--132591 32 2.1 32 94 0 114 25 9 22 42 1.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
140303--140367 21 3.0 21 89 10 89 50 12 1 35 1.49
148100--148159 18 3.3 18 88 0 93 33 25 10 31 1.89
150512--150601 21 4.1 22 77 8 85 55 10 21 13 1.66
153175--153222 20 2.4 20 100 0 96 25 22 10 41 1.85
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Tables: 1
The End!