NC_028185.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_028185.1 Ficus racemosa chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159473
Tables: 1
This is table 1 of 1 ( 41 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1616--1649 17 2.0 17 100 0 68 70 0 5 23 1.09
6427--6475 25 2.0 25 88 8 73 55 2 0 42 1.11
8531--8559 14 2.0 15 93 6 51 41 6 0 51 1.28
28148--28173 11 2.4 11 100 0 52 65 7 7 19 1.43
29480--29535 19 3.1 18 77 10 60 32 5 3 58 1.37
30319--30362 21 2.1 21 100 0 88 45 13 4 36 1.64
31306--31338 16 2.1 16 94 0 57 27 27 12 33 1.92
33331--33369 19 2.1 19 90 0 60 41 5 12 41 1.65
38598--38647 18 2.8 18 96 3 93 56 0 4 40 1.18
38593--38656 13 5.2 13 73 19 57 54 0 3 42 1.16
38579--38665 24 3.6 24 70 22 67 54 0 5 40 1.25
44910--44950 21 2.0 21 90 9 68 60 0 0 39 0.96
46824--46905 4 19.8 4 70 20 53 70 1 0 28 0.95
46827--46895 13 5.3 13 74 6 68 71 1 0 27 0.95
46827--46905 25 3.1 25 74 17 72 70 1 0 27 0.95
48835--48874 18 2.1 19 90 9 64 70 0 5 25 1.08
48828--48881 24 2.2 26 83 12 69 68 1 5 24 1.21
61983--62020 12 3.4 12 86 13 55 44 0 5 50 1.24
61977--62026 21 2.5 20 81 18 59 50 0 4 46 1.20
62182--62408 113 2.0 113 100 0 454 36 10 8 44 1.70
69194--69230 16 2.4 16 95 4 67 56 0 5 37 1.22
71632--71670 21 1.9 21 89 5 62 30 23 10 35 1.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
74053--74092 19 2.1 19 100 0 80 35 25 0 40 1.56
75436--75469 16 2.1 16 100 0 68 35 5 5 52 1.50
85977--86010 8 4.0 8 85 14 50 38 11 11 38 1.79
88071--88110 15 2.6 16 88 8 64 10 0 2 87 0.63
92889--92940 21 2.5 21 100 0 104 7 23 9 59 1.54
92869--92957 21 4.1 21 84 5 81 11 24 7 56 1.61
95317--95354 18 2.1 18 100 0 76 34 5 26 34 1.79
102708--102736 14 2.1 14 100 0 58 34 6 13 44 1.71
116846--116888 21 2.0 21 86 8 61 32 2 2 62 1.20
117776--117819 22 1.9 24 90 9 74 54 6 0 38 1.27
117872--117912 14 2.9 14 85 10 57 41 4 0 53 1.22
117942--117992 17 3.3 15 84 10 59 64 1 1 31 1.15
117944--117979 17 2.1 17 100 0 72 63 0 0 36 0.94
118596--118640 22 2.0 22 100 0 90 60 0 4 35 1.17
122856--122897 19 2.2 19 91 0 66 30 23 2 42 1.67
130039--130076 18 2.1 18 95 0 67 10 0 7 81 0.87
144848--144876 14 2.1 14 100 0 58 44 13 6 34 1.71
152230--152267 18 2.1 18 100 0 76 34 26 5 34 1.79
154641--154695 21 2.6 21 97 0 92 58 9 21 10 1.60
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Tables: 1
The End!