NC_028549.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_028549.1 Dendrobium chrysotoxum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153953
Tables: 1
This is table 1 of 1 ( 65 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3603--3637 18 1.9 18 94 0 61 77 0 20 2 0.90
5289--5331 16 2.6 16 92 3 68 55 13 0 30 1.39
5366--5408 18 2.4 18 88 0 59 55 4 4 34 1.41
5743--5840 49 2.0 49 97 0 187 50 12 10 27 1.72
13537--13561 12 2.1 12 100 0 50 24 24 8 44 1.80
14796--14820 12 2.1 12 100 0 50 48 0 16 36 1.46
27644--27821 89 2.0 89 100 0 356 39 14 19 26 1.90
28581--28751 84 2.0 84 98 0 333 25 16 7 51 1.69
30413--30527 57 2.0 57 100 0 230 26 13 15 44 1.84
32423--32561 69 2.0 69 100 0 278 43 11 17 28 1.83
35715--35903 93 2.0 93 100 0 378 32 18 11 37 1.87
46289--46464 86 2.0 86 100 0 352 52 7 8 30 1.60
47066--47482 217 1.9 217 100 0 834 40 15 11 33 1.83
49827--49923 48 2.0 48 100 0 194 27 8 22 41 1.82
53540--53569 10 3.1 10 90 9 53 30 6 0 63 1.20
53707--53759 13 4.4 13 68 18 51 33 9 1 54 1.43
53684--53764 35 2.3 35 97 0 153 33 8 2 55 1.44
53852--53912 16 3.7 16 81 16 79 27 19 0 52 1.46
53838--53900 6 10.7 6 73 26 55 30 17 0 52 1.45
53838--53911 34 2.2 34 97 0 139 29 18 0 51 1.47
56024--56099 36 2.1 36 100 0 152 10 31 7 50 1.66
58697--58721 13 1.9 13 100 0 50 52 0 0 48 1.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
67729--67758 15 2.0 15 93 0 51 63 13 16 6 1.50
67765--67808 21 2.1 21 86 0 61 34 25 9 31 1.87
71585--71722 67 2.1 67 100 0 276 23 25 11 39 1.89
71839--71864 12 2.2 12 100 0 52 42 0 0 57 0.98
72522--72625 50 2.1 51 98 1 201 33 15 9 41 1.80
72530--72637 50 2.2 50 93 3 182 37 14 10 37 1.80
74600--74696 47 2.1 47 100 0 194 45 8 8 38 1.64
77899--77938 20 2.0 20 100 0 80 45 0 20 35 1.51
86266--86342 39 2.0 39 97 2 147 37 7 20 33 1.82
90501--90584 21 3.8 22 92 6 134 14 26 10 48 1.76
90501--90591 43 2.1 44 91 4 148 13 26 9 50 1.72
90523--90591 22 3.2 22 84 10 97 13 27 8 50 1.70
92944--93031 9 10.1 9 78 7 83 32 4 26 36 1.77
92951--93027 18 3.9 18 81 18 100 33 5 27 33 1.79
92968--93015 24 2.0 24 100 0 96 33 8 25 33 1.86
92968--93028 24 2.5 24 89 5 79 32 6 26 34 1.82
100654--101153 259 1.9 259 100 0 1000 24 21 15 38 1.93
101320--101390 14 4.9 14 84 5 88 22 11 2 63 1.40
101324--101390 29 2.3 29 100 0 134 23 10 2 62 1.41
101377--101404 11 2.5 11 100 0 56 28 7 0 64 1.20
101324--101417 14 6.8 14 76 20 83 26 9 2 61 1.38
101446--101500 8 7.0 8 80 19 71 25 10 12 50 1.73
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
101436--101503 31 2.2 31 100 0 136 25 8 13 52 1.68
112667--112742 2 38.0 2 97 0 143 51 0 0 48 1.00
113388--113639 126 2.0 127 96 3 461 19 9 7 63 1.47
114019--114146 63 2.0 63 98 0 247 23 22 28 25 1.99
120246--120302 12 5.2 11 76 12 55 77 3 3 15 1.05
121877--121976 44 2.3 44 98 0 191 8 22 21 49 1.75
125609--125720 51 2.2 52 93 6 194 10 31 10 47 1.73
136189--136243 8 7.0 8 80 19 71 50 12 10 25 1.73
136186--136253 31 2.2 31 100 0 136 52 13 8 25 1.68
136272--136365 14 6.8 14 79 13 83 61 2 9 26 1.38
136285--136312 11 2.5 11 100 0 56 64 0 7 28 1.20
136299--136365 29 2.3 29 100 0 134 62 2 10 23 1.41
136283--136369 43 2.0 43 84 8 115 63 2 10 24 1.38
136299--136369 14 4.9 14 84 5 88 63 2 11 22 1.40
136536--137035 259 1.9 259 100 0 1000 38 15 21 24 1.93
144662--144738 18 3.9 18 81 18 100 33 27 5 33 1.79
144658--144745 9 10.1 9 75 7 83 36 26 4 32 1.77
147105--147188 21 3.8 22 92 6 134 48 10 26 14 1.76
147098--147188 43 2.1 45 91 4 150 50 9 26 13 1.72
151336--151420 39 2.2 38 91 6 136 34 21 8 36 1.83
151347--151423 39 2.0 39 97 2 147 33 20 7 37 1.82
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Tables: 1
The End!