NC_028617.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_028617.1 Juglans regia voucher JREG20151001 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160537
Tables: 1
This is table 1 of 1 ( 63 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
16--48 16 2.1 16 94 0 57 33 0 18 48 1.48
9491--9541 14 3.7 14 92 2 77 29 1 0 68 1.00
9494--9551 22 2.7 21 82 17 66 29 1 1 67 1.11
9717--9751 18 1.9 18 88 0 52 51 11 0 37 1.38
11057--11105 26 2.0 24 88 11 73 34 8 4 53 1.50
11161--11203 21 2.0 23 90 9 72 48 4 4 41 1.44
11226--11264 9 4.2 9 83 6 51 46 2 5 46 1.38
11227--11264 19 2.0 19 94 0 67 44 2 5 47 1.39
11539--11625 22 3.7 23 75 17 65 66 1 4 27 1.18
11590--11626 20 1.9 20 94 5 67 67 0 5 27 1.12
17536--17565 14 2.1 14 93 0 51 46 10 20 23 1.80
19521--19550 15 2.0 15 100 0 60 46 0 33 20 1.51
32021--32057 17 2.2 17 100 0 74 35 5 10 48 1.61
33473--33508 18 2.0 18 100 0 72 66 5 5 22 1.34
34596--34655 20 3.0 20 100 0 120 35 5 0 60 1.19
34596--34672 40 1.9 39 85 12 104 33 6 1 58 1.32
34672--34696 13 1.9 13 100 0 50 44 0 0 56 0.99
34767--34810 17 2.8 17 86 10 58 50 4 6 38 1.50
35881--35915 15 2.3 15 95 0 61 68 0 14 17 1.21
36211--36253 6 7.3 6 80 15 54 34 0 0 65 0.93
36237--36312 2 39.0 2 78 5 75 44 0 1 53 1.08
36221--36311 16 5.3 18 78 11 93 42 0 1 56 1.06
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
40035--40061 14 1.9 14 100 0 54 29 11 7 51 1.64
40219--40253 17 2.1 17 89 5 54 25 17 17 40 1.90
40659--40702 14 2.9 15 86 13 63 63 0 0 36 0.95
40727--40757 10 3.1 10 95 0 53 58 0 0 41 0.98
40961--41027 17 4.2 17 78 16 81 50 0 23 25 1.49
40962--41021 30 2.0 30 100 0 120 50 0 26 23 1.50
46444--46477 17 2.0 17 100 0 68 23 17 11 47 1.81
49777--49818 21 2.0 21 85 0 57 38 2 11 47 1.53
53926--53970 19 2.5 19 85 7 58 20 6 4 68 1.29
53944--54002 28 2.1 28 81 12 68 23 8 0 67 1.17
53994--54049 2 31.0 2 73 20 52 58 0 0 41 0.98
53994--54049 11 5.4 11 76 20 57 58 0 0 41 0.98
53994--54049 13 4.1 14 84 13 73 58 0 0 41 0.98
54010--54047 19 2.0 19 100 0 76 63 0 0 36 0.95
56060--56093 17 2.0 17 94 0 59 50 2 5 41 1.42
56349--56401 6 10.0 5 81 18 63 39 0 5 54 1.24
56351--56401 11 4.7 11 86 13 79 39 0 5 54 1.24
56349--56401 21 2.5 22 87 12 83 39 0 5 54 1.24
60124--60149 13 2.0 13 100 0 52 38 0 15 46 1.46
62081--62107 13 2.1 13 100 0 54 40 7 22 29 1.81
65725--66152 214 2.0 214 100 0 856 30 11 18 40 1.85
71176--71212 19 1.9 19 94 0 65 45 0 10 43 1.39
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
78113--78148 17 2.1 17 100 0 72 63 5 11 19 1.46
85164--85212 24 2.0 24 84 0 62 30 34 12 22 1.91
94862--94944 21 3.7 23 75 18 77 13 24 8 54 1.66
94882--94951 21 3.3 21 83 0 86 11 24 7 57 1.59
99565--99605 20 2.0 20 95 0 73 41 17 9 31 1.82
104515--104552 12 2.8 14 88 11 53 18 7 0 73 1.06
104561--104586 12 2.2 12 100 0 52 7 7 0 84 0.77
105082--105119 18 2.1 18 95 0 67 28 5 5 60 1.40
113270--113330 31 2.0 31 93 0 104 37 24 9 27 1.87
116089--116118 15 2.0 15 100 0 60 73 0 6 20 1.05
126510--126555 20 2.2 21 84 7 58 45 0 4 50 1.21
137267--137327 31 2.0 31 93 0 104 27 9 24 37 1.87
145478--145515 18 2.1 18 95 0 67 60 5 5 28 1.40
146011--146036 12 2.2 12 100 0 52 84 0 7 7 0.77
146045--146082 12 2.8 14 88 11 53 73 0 7 18 1.06
150992--151032 20 2.0 20 95 0 73 31 9 17 41 1.82
153252--153293 18 2.3 18 87 0 66 33 30 4 30 1.78
155664--155715 21 2.5 21 90 0 86 59 9 21 9 1.57
155653--155735 24 3.7 23 75 18 77 54 8 24 13 1.66
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Tables: 1
The End!