NC_028703.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_028703.1 Panax japonicus chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  156188

    Tables:   1   

    This is table  1  of  1  ( 23 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  4364--4395                         16       2.0      16          100       0         64      68   0    0    31   0.90

  4930--4974                         23       2.0      23          95        4         83      62   4    8    24   1.43

  6581--6619                         18       2.2      17          90        4         60      64   17   2    15   1.41

  7033--7065                         16       2.1      16          94        0         57      21   6    18   54   1.64

  8978--9015                         19       2.0      19          85        10        51      39   0    26   34   1.57

  9649--9680                         15       2.1      15          100       0         64      81   0    12   6    0.87

  32865--32917                       28       1.9      28          84        3         72      66   0    3    30   1.10

  33268--33401                       67       2.0      67          98        0         259     33   14   15   35   1.89

  33374--33430                       19       3.0      19          100       0         114     36   10   5    47   1.61

  34122--34165                       21       2.1      21          95        0         79      36   6    4    52   1.49

  59331--59380                       25       2.0      25          96        0         91      30   4    14   52   1.59

  69331--69363                       17       1.9      17          88        11        50      0    33   0    66   0.92

  70078--70118                       21       2.0      21          95        0         73      29   26   9    34   1.88

  74103--74135                       15       2.3      15          89        5         50      24   12   6    57   1.57

  76285--76322                       19       2.0      19          100       0         76      52   15   10   21   1.72

  92872--92949                       18       4.3      18          100       0         156     28   11   26   33   1.91

  95655--95688                       17       2.0      17          100       0         68      41   11   5    41   1.66

  111400--111521                     57       2.1      57          98        0         235     50   12   30   7    1.67

  128199--128252                     24       2.3      24          81        12        67      18   3    14   62   1.46

  130867--130988                     57       2.1      57          98        0         235     7    30   12   50   1.67

  141512--141557                     23       2.0      23          82        0         56      58   8    6    26   1.52

  146700--146733                     17       2.0      17          100       0         68      41   5    11   41   1.66

  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  149439--149516                     18       4.3      18          100       0         156     33   26   11   28   1.91
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!