NC_029392.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_029392.1 Angelica dahurica voucher 13T-05 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 146918
Tables: 1
This is table 1 of 1 ( 23 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7095--7122 14 2.0 14 100 0 56 35 21 0 42 1.53
9866--9905 21 1.9 21 85 10 55 20 2 5 72 1.15
21664--21760 49 2.0 49 87 0 140 29 17 19 32 1.95
28692--28722 14 2.2 14 100 0 62 35 0 6 58 1.24
32608--32633 12 2.2 12 100 0 52 57 0 0 42 0.98
37516--37545 15 2.0 15 100 0 60 46 0 26 26 1.53
47302--47338 9 4.2 9 96 3 67 64 0 0 35 0.94
48356--48388 11 3.0 11 100 0 66 36 9 0 54 1.32
48361--48401 13 3.3 13 86 6 50 41 7 2 48 1.44
48357--48404 11 4.2 11 87 10 60 39 8 4 47 1.53
49356--49396 18 2.3 18 95 0 73 70 4 14 9 1.30
63513--63539 14 1.9 14 100 0 54 40 14 7 37 1.74
69391--69431 21 2.0 21 90 0 64 26 26 12 34 1.92
75687--75723 19 1.9 19 94 0 65 54 13 8 24 1.66
89846--89913 21 3.2 21 77 8 75 11 22 8 57 1.61
91015--91058 15 2.9 15 93 0 70 27 34 13 25 1.93
92278--92397 18 6.7 18 98 0 222 28 9 28 34 1.88
103466--103506 20 2.0 20 100 0 82 51 14 29 4 1.63
108131--108196 32 2.1 32 97 0 123 40 24 9 25 1.84
113819--113872 18 3.2 18 71 28 64 37 5 9 48 1.59
119185--119214 12 2.5 12 94 0 51 46 0 6 46 1.29
132327--132392 32 2.1 32 97 0 123 25 9 24 40 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
137017--137057 20 2.0 20 100 0 82 4 29 14 51 1.63
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Tables: 1
The End!