NC_029428.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_029428.1 Epimedium sagittatum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158273
Tables: 1
This is table 1 of 1 ( 35 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
41434--41464 15 2.1 15 93 0 53 9 25 41 22 1.84
52636--52662 14 1.9 14 100 0 54 70 0 7 22 1.12
65383--65426 22 2.0 22 100 0 88 27 22 13 36 1.92
72098--72189 45 2.0 45 97 0 175 35 15 20 28 1.93
74231--74381 48 2.9 53 79 13 177 29 18 15 36 1.92
74284--74381 48 2.0 48 96 0 178 31 20 14 33 1.92
81941--81987 24 2.0 24 86 0 67 25 36 14 23 1.93
87076--87101 13 2.0 13 100 0 52 23 7 7 61 1.49
89188--89235 14 3.5 13 88 5 60 62 4 12 20 1.46
89568--89634 33 2.0 33 88 0 98 31 17 29 20 1.96
91940--92033 27 3.4 27 85 8 143 35 6 25 32 1.81
94606--94653 9 5.3 9 89 0 69 33 0 35 31 1.58
94602--94653 18 2.9 18 82 0 77 34 0 34 30 1.58
94602--94655 27 2.0 27 96 0 99 33 0 35 31 1.58
110861--110891 15 2.1 15 100 0 62 61 0 32 6 1.21
113338--113395 24 2.4 24 83 13 75 62 8 20 8 1.51
113542--113577 15 2.4 15 95 0 63 55 5 19 19 1.62
113747--113801 12 4.6 12 93 0 83 45 12 34 7 1.70
113809--113947 66 2.1 67 91 4 226 43 18 20 17 1.89
113902--113976 24 3.3 21 66 20 60 44 17 20 18 1.88
113912--113987 24 3.2 24 67 14 66 46 15 21 17 1.84
113902--113995 48 2.0 48 97 0 179 44 17 20 18 1.87
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
131357--131450 48 2.0 48 97 0 179 18 20 17 44 1.87
131405--131543 66 2.1 67 91 4 226 17 20 18 43 1.89
131551--131605 12 4.6 12 93 0 83 7 34 12 45 1.70
131775--131810 15 2.4 15 95 0 63 19 19 5 55 1.62
131848--131924 33 2.3 33 84 4 93 24 24 7 42 1.81
131957--132014 24 2.4 25 80 16 77 8 20 8 62 1.51
134461--134491 15 2.1 15 100 0 62 6 32 0 61 1.21
150703--150750 9 5.3 9 89 0 69 29 35 0 35 1.58
150699--150750 18 2.9 18 82 0 77 30 34 0 34 1.58
150697--150750 27 2.0 27 96 0 99 31 35 0 33 1.58
153319--153412 27 3.4 27 85 8 143 32 25 6 35 1.81
155718--155784 33 2.0 33 88 0 98 20 29 17 31 1.96
156117--156164 14 3.5 13 86 8 60 20 12 4 62 1.46
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Tables: 1
The End!