NC_029465.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_029465.1 Saussurea involucrata voucher 408 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152490
Tables: 1
This is table 1 of 1 ( 23 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1416--1442 13 2.1 13 100 0 54 29 7 25 37 1.83
3807--3846 19 2.1 19 100 0 80 50 0 5 45 1.23
4005--4052 20 2.3 21 92 7 89 45 4 4 45 1.41
7989--8036 21 2.3 21 96 3 89 54 6 8 31 1.55
35459--35485 9 3.0 9 100 0 54 11 11 44 33 1.75
36227--36322 18 5.3 18 85 0 111 26 9 27 37 1.87
52120--52181 32 1.9 32 93 0 106 41 22 8 27 1.82
69027--69073 24 2.0 24 100 0 94 12 40 0 46 1.42
69246--69287 21 2.0 21 95 0 75 50 30 0 19 1.48
69284--69327 21 2.1 21 95 0 79 31 11 13 43 1.80
72027--72117 45 2.0 45 93 0 155 29 13 10 46 1.77
74829--74890 32 1.9 32 93 0 106 27 8 22 41 1.82
90688--90783 18 5.3 18 85 0 111 37 27 9 26 1.87
91525--91551 9 3.0 9 100 0 54 33 44 11 11 1.75
107115--107146 15 2.1 15 100 0 64 62 6 18 12 1.50
122719--122743 12 2.1 12 100 0 50 60 8 8 24 1.52
127432--127469 18 2.1 18 95 0 67 60 2 5 31 1.33
127438--127497 27 2.2 27 90 0 102 55 1 3 40 1.27
127622--127648 13 2.1 13 100 0 54 62 0 7 29 1.22
127595--127646 21 2.4 21 81 12 70 61 0 7 30 1.24
128761--128796 18 2.0 18 100 0 72 44 11 0 44 1.39
149433--149462 15 2.0 15 93 0 51 36 16 13 33 1.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
152174--152205 16 2.0 16 100 0 64 43 25 0 31 1.55
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Tables: 1
The End!